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Method

Multicondition and multimodal temporal profile inference during mouse embryonic development

  • Ran Zhang
  • Chengxiang Qiu
  • Galina N. Filippova
  • Gang Li
  • Jay Shendure
  • Jean-Philippe Vert
  • Xinxian Deng
  • William Stafford Noble
  • Christine M. Disteche
  • First Published August 14, 2025
Resource

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

  • Timothy J. Durham
  • Riza M. Daza
  • Louis Gevirtzman
  • Darren A. Cusanovich
  • Olubusayo Bolonduro
  • William Stafford Noble
  • Jay Shendure
  • Robert H. Waterston
  • First Published April 22, 2021
Research

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021
Research

Copy number variation underlies complex phenotypes in domestic dog breeds and other canids

  • Aitor Serres-Armero
  • Brian W. Davis
  • Inna S. Povolotskaya
  • Carlos Morcillo-Suarez
  • Jocelyn Plassais
  • David Juan
  • Elaine A. Ostrander
  • Tomas Marques-Bonet
  • First Published April 16, 2021
Research

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

  • Adebola Enikanolaiye
  • Julie Ruston
  • Rong Zeng
  • Christine Taylor
  • Marijke Schrock
  • Christie M. Buchovecky
  • Jay Shendure
  • Elif Acar
  • Monica J. Justice
  • First Published April 21, 2020
Resource

A comparison of gene expression and DNA methylation patterns across tissues and species

  • Lauren E. Blake
  • Julien Roux
  • Irene Hernando-Herraez
  • Nicholas E. Banovich
  • Raquel Garcia Perez
  • Chiaowen Joyce Hsiao
  • ... [+1 authors] ...,
  • Ittai Eres
  • Claudia Cuevas
  • Tomas Marques-Bonet
  • Yoav Gilad
  • First Published January 17, 2020
Corrigendum

Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

  • Mario Ventura
  • Claudia R. Catacchio
  • Saba Sajjadian
  • Laura Vives
  • Peter H. Sudmant
  • Tomas Marques-Bonet
  • Tina A. Graves
  • Richard K. Wilson
  • Evan E. Eichler
  • First Published September 1, 2017
Research

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published November 9, 2016
Research

Worldwide patterns of genomic variation and admixture in gray wolves

  • Zhenxin Fan
  • Pedro Silva
  • Ilan Gronau
  • Shuoguo Wang
  • Aitor Serres Armero
  • Rena M. Schweizer Oscar Ramirez John Pollinger Marco Galaverni Diego Ortega Del-Vecchyo Lianming Du Wenping Zhang Zhihe Zhang Jinchuan Xing Carles Vilà
  • ... [+10 authors] ...,
  • Tomas Marques-Bonet
  • Raquel Godinho
  • Bisong Yue
  • Robert K. Wayne
  • First Published December 17, 2015
Corrigendum

Corrigendum: MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

  • Keisha D. Carlson
  • Peter H. Sudmant
  • Maximilian O. Press
  • Evan E. Eichler
  • Jay Shendure
  • Christine Queitsch
  • First Published August 3, 2015
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