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Method

Multicondition and multimodal temporal profile inference during mouse embryonic development

  • Ran Zhang
  • Chengxiang Qiu
  • Galina N. Filippova
  • Gang Li
  • Jay Shendure
  • Jean-Philippe Vert
  • Xinxian Deng
  • William Stafford Noble
  • Christine M. Disteche
  • First Published August 14, 2025
Research

Identification of the male-specific region on the guppy Y Chromosome from a haplotype-resolved assembly

  • Kang Du
  • Oliver Deusch
  • Ilja Bezrukov
  • Christa Lanz
  • Yann Guiguen
  • Margarete Hoffmann
  • ... [+1 authors] ...,
  • Anette Habring
  • Detlef Weigel
  • Manfred Schartl
  • Christine Dreyer
  • First Published March 5, 2025
Research

An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication

  • Elise Parey
  • Alexandra Louis
  • Jérôme Montfort
  • Yann Guiguen
  • Hugues Roest Crollius
  • Camille Berthelot
  • First Published August 12, 2022
Resource

Girardinichthys multiradiatus, and the evolution of sex chromosomes and placentation" > Genome biology of the darkedged splitfin, Girardinichthys multiradiatus, and the evolution of sex chromosomes and placentation

  • Kang Du
  • Martin Pippel
  • Susanne Kneitz
  • Romain Feron
  • Irene da Cruz
  • Sylke Winkler Brigitta Wilde Edgar G. Avila Luna
  • ... [+3 authors] ...,
  • Gene Myers
  • Yann Guiguen
  • Constantino Macias Garcia
  • Manfred Schartl
  • First Published January 26, 2022
Research

gsdf as the master sex determining gene of sablefish" > Allelic diversification after transposable element exaptation promoted gsdf as the master sex determining gene of sablefish

  • Amaury Herpin
  • Manfred Schartl
  • Alexandra Depincé
  • Yann Guiguen
  • Julien Bobe
  • Aurélie Hua-Van Edward S. Hayman Anna Octavera
  • ... [+3 authors] ...,
  • Goro Yoshizaki
  • Krista M. Nichols
  • Giles W. Goetz
  • J. Adam Luckenbach
  • First Published June 28, 2021
Resource

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

  • Timothy J. Durham
  • Riza M. Daza
  • Louis Gevirtzman
  • Darren A. Cusanovich
  • Olubusayo Bolonduro
  • William Stafford Noble
  • Jay Shendure
  • Robert H. Waterston
  • First Published April 22, 2021
Research

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021
Research

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

  • Adebola Enikanolaiye
  • Julie Ruston
  • Rong Zeng
  • Christine Taylor
  • Marijke Schrock
  • Christie M. Buchovecky
  • Jay Shendure
  • Elif Acar
  • Monica J. Justice
  • First Published April 21, 2020
Corrigendum

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published May 1, 2018
Research

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published November 9, 2016
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