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Method

Multicondition and multimodal temporal profile inference during mouse embryonic development

  • Ran Zhang
  • Chengxiang Qiu
  • Galina N. Filippova
  • Gang Li
  • Jay Shendure
  • Jean-Philippe Vert
  • Xinxian Deng
  • William Stafford Noble
  • Christine M. Disteche
  • First Published August 14, 2025
Resource

DEAD box RNA helicases are pervasive protein kinase interactors and activators

  • Alexander Hirth
  • Edoardo Fatti
  • Eugen Netz
  • Sergio P. Acebron
  • Dimitris Papageorgiou
  • Andrea Švorinić Cristina-Maria Cruciat Emil Karaulanov Alexandr Gopanenko Tianheng Zhu
  • ... [+5 authors] ...,
  • Irmgard Sinning
  • Jeroen Krijgsveld
  • Oliver Kohlbacher
  • Christof Niehrs
  • First Published July 10, 2024
Resource

Interspecies regulatory landscapes and elements revealed by novel joint systematic integration of human and mouse blood cell epigenomes

  • Guanjue Xiang
  • Xi He
  • Belinda M. Giardine
  • Kathryn J. Isaac
  • Dylan J. Taylor
  • Rajiv C. McCoy Camden Jansen Cheryl A. Keller Alexander Q. Wixom April Cockburn Amber Miller Qian Qi Yanghua He Yichao Li Jens Lichtenberg Elisabeth F. Heuston Stacie M. Anderson Jing Luan Marit W. Vermunt Feng Yue Michael E.G. Sauria Michael C. Schatz James Taylor Berthold Göttgens Jim R. Hughes Douglas R. Higgs Mitchell J. Weiss Yong Cheng Gerd A. Blobel David M. Bodine
  • ... [+25 authors] ...,
  • Yu Zhang
  • Qunhua Li
  • Shaun Mahony
  • Ross C. Hardison
  • First Published July 1, 2024
Resource

Haplotype-resolved 3D chromatin architecture of the hybrid pig

  • Yu Lin
  • Jing Li
  • Yiren Gu
  • Long Jin
  • Jingyi Bai
  • Jiaman Zhang Yujie Wang Pengliang Liu Keren Long Mengnan He Diyan Li Can Liu Ziyin Han Yu Zhang Xiaokai Li Bo Zeng Lu Lu Fanli Kong Ying Sun Yongliang Fan Xun Wang Tao Wang An'an Jiang Jideng Ma Linyuan Shen Li Zhu Yanzhi Jiang Guoqing Tang Xiaolan Fan Qingyou Liu Hua Li Jinyong Wang Li Chen
  • ... [+28 authors] ...,
  • Liangpeng Ge
  • Xuewei Li
  • Qianzi Tang
  • Mingzhou Li
  • First Published March 13, 2024
Research

Parental methylome reprogramming in human uniparental blastocysts reveals germline memory transition

  • Jiawei Xu
  • Yimin Shu
  • Guidong Yao
  • Yu Zhang
  • Wenbin Niu
  • Yile Zhang Xueshan Ma Haixia Jin Fuli Zhang Senlin Shi Yang Wang Wenyan Song Shanjun Dai Luyao Cheng
  • ... [+9 authors] ...,
  • Xiangyang Zhang
  • Wei Xie
  • Aaron J. Hsueh
  • Yingpu Sun
  • First Published July 30, 2021
Resource

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

  • Timothy J. Durham
  • Riza M. Daza
  • Louis Gevirtzman
  • Darren A. Cusanovich
  • Olubusayo Bolonduro
  • William Stafford Noble
  • Jay Shendure
  • Robert H. Waterston
  • First Published April 22, 2021
Research

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021
Research

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

  • Adebola Enikanolaiye
  • Julie Ruston
  • Rong Zeng
  • Christine Taylor
  • Marijke Schrock
  • Christie M. Buchovecky
  • Jay Shendure
  • Elif Acar
  • Monica J. Justice
  • First Published April 21, 2020
Resource

An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis

  • Guanjue Xiang
  • Cheryl A. Keller
  • Elisabeth Heuston
  • Belinda M. Giardine
  • Lin An
  • Alexander Q. Wixom Amber Miller April Cockburn Michael E.G. Sauria Kathryn Weaver Jens Lichtenberg Berthold Göttgens Qunhua Li David Bodine Shaun Mahony James Taylor Gerd A. Blobel Mitchell J. Weiss Yong Cheng Feng Yue
  • ... [+15 authors] ...,
  • Jim Hughes
  • Douglas R. Higgs
  • Yu Zhang
  • Ross C. Hardison
  • First Published March 4, 2020
Resource

Systematic genome editing of the genes on zebrafish Chromosome 1 by CRISPR/Cas9

  • Yonghua Sun
  • Bo Zhang
  • Lingfei Luo
  • De-Li Shi
  • Han Wang
  • Zongbin Cui Honghui Huang Ying Cao Xiaodong Shu Wenqing Zhang Jianfeng Zhou Yun Li Jiulin Du Qingshun Zhao Jun Chen Hanbing Zhong Tao P. Zhong Li Li Jing-Wei Xiong Jinrong Peng Wuhan Xiao Jian Zhang Jihua Yao Zhan Yin Xianming Mo Gang Peng Jun Zhu Yan Chen Yong Zhou Dong Liu Weijun Pan Yiyue Zhang Hua Ruan Feng Liu Zuoyan Zhu Anming Meng The ZAKOC Consortium Yonghua Sun Luyuan Pan Houpeng Wang Weixun Xie Mudan He Ding Ye Kuoyu Li Feng Xiong Liyue Liu Linglu Li Yun Zhang Bo Zhang Da Liu Zhenchao Cheng Yingying Hu Qian Wu Zhou Luo Yutian Zhang Yingdan Wu Wenyuan Li Lingfei Luo Jianlong Ma Dashuang Mo Pengcheng Cai Jinzi Chen Junhui Sun Yang Zhou Chuan Wu Rui Ni De-Li Shi Ming Shao Yan-Jun Zhang Li-Jun Feng Xiao-Ning Cheng Ji-Tong Li Yan-Yi Xing Yan Zhang Ya-Ping Meng Bei-Bei Yu Han Wang Jian Huang Shuqing Zhang Cheng Ji Yicheng Tan Jingjing Wang Fanmiao Zhang Mingyong Wang Guodong Huang Zhaomin Zhong Wei Zhang Zongbin Cui Yong Long Guili Song Xiaohui Li Xixi Li Kai Chen Jing Ren Junjun Yan Qing Li Honghui Huang Hua Ruan Shicheng Zhu Xuejiao Chen Jingjing Pan Faming Jiang Jiehui Chen Chao Huang Guoping Dong Xiaogui Yi Ying Cao Ruikun Hu Weilai Huang Jiangfang Liu Hong WangXiao Dong Shu Jianhong Xia Shaoyang Zhao Pengtao Wang Xiuhua Wu Wenqing Zhang Yiyue Zhang Mengchang Xu Wei Liu Zhibing Huang Qing Lin Mei Wu Jianfeng Zhou Aibo Sheng Peipei Tang Xiaoxia Gong Wei Mou Congcong Zu Yun Li Ling Lu Yunzhang Liu Xiaozhi Rong Jianyang Chen Jiulin Du Jiwen Bu Xufei Du Tingting Liu Shanye Gu Qingshun Zhao Zhangji Dong Xiaohua Dong Shasha Cao Yunyun Yue Chun Gu Meijing Liu Jun Chen Hongjian Gong Hanbing Zhong Xuanjun Yang Jiahao Chen Qiushi Xu Tao P. Zhong Daqin Jin Peilu She Jianjian Sun Kaa Seng Lai Li Li Yu Zhang Yanyan Shi Fangying Zhao Jing-Wei Xiong Meijun Pang Lu Gao Lei Lei Jinrong Peng Jane Lo Wuhan Xiao Xiaolian Cai Gang Ouyang Jian Zhang Weirui Ma Liyun Miao Jihua Yao Yu Hu Zhan Yin Xianming Mo Xue Li Gang Peng Cuizhen Zhang Fenghua Wang Jun Zhu Ruimeng Yang Hao Yuan Yan Chen Yi Pan Yong Zhou Dong Liu Feng Zhao Weijun Pan Feng Liu Yanyan Ding Yuanyuan Xue Lu Wang Yifan Zhang Dongyuan Ma Xinyan Lu Shuai Gao Jun Xia Zuoyan Zhu Anming Meng Xingfeng Liu Juhui Qiu Bo Gong Luxi Chen Cong Xiong Likun Yao
  • ... [+202 authors] ...,
  • Cencan Xing
  • Yixia Wang
  • Weimin Shen
  • Jiawei Sun
  • First Published December 12, 2019
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