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Multicondition and multimodal temporal profile inference during mouse embryonic development

  • Ran Zhang
  • Chengxiang Qiu
  • Galina N. Filippova
  • Gang Li
  • Jay Shendure
  • Jean-Philippe Vert
  • Xinxian Deng
  • William Stafford Noble
  • Christine M. Disteche
  • First Published August 14, 2025

Oikopleura dioica cryptic species" > Extreme genome scrambling in marine planktonic Oikopleura dioica cryptic species

  • Charles Plessy
  • Michael J. Mansfield
  • Aleksandra Bliznina
  • Aki Masunaga
  • Charlotte West
  • Yongkai Tan Andrew W. Liu Jan Grašič María Sara del Río Pisula Gaspar Sánchez-Serna Marc Fabrega-Torrus Alfonso Ferrández-Roldán Vittoria Roncalli Pavla Navratilova Eric M. Thompson
  • ... [+10 authors] ...,
  • Takeshi Onuma
  • Hiroki Nishida
  • Cristian Cañestro
  • Nicholas M. Luscombe
  • First Published April 15, 2024

Meta-analysis of human and mouse ALS astrocytes reveals multi-omic signatures of inflammatory reactive states

  • Oliver J. Ziff
  • Benjamin E. Clarke
  • Doaa M. Taha
  • Hamish Crerar
  • Nicholas M. Luscombe
  • Rickie Patani
  • First Published December 28, 2021

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

  • Timothy J. Durham
  • Riza M. Daza
  • Louis Gevirtzman
  • Darren A. Cusanovich
  • Olubusayo Bolonduro
  • William Stafford Noble
  • Jay Shendure
  • Robert H. Waterston
  • First Published April 22, 2021

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

  • Adebola Enikanolaiye
  • Julie Ruston
  • Rong Zeng
  • Christine Taylor
  • Marijke Schrock
  • Christie M. Buchovecky
  • Jay Shendure
  • Elif Acar
  • Monica J. Justice
  • First Published April 21, 2020

Genome-wide reconstitution of chromatin transactions reveals that RSC preferentially disrupts H2AZ-containing nucleosomes

  • Aylin Cakiroglu
  • Cedric R. Clapier
  • Andreas H. Ehrensberger
  • Elodie Darbo
  • Bradley R. Cairns
  • Nicholas M. Luscombe
  • Jesper Q. Svejstrup
  • First Published May 16, 2019

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published May 1, 2018

Integrated analysis sheds light on evolutionary trajectories of young transcription start sites in the human genome

  • Cai Li
  • Boris Lenhard
  • Nicholas M. Luscombe
  • First Published April 4, 2018

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published November 9, 2016
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