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Resource

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

  • Valerie A. Schneider
  • Tina Graves-Lindsay
  • Kerstin Howe
  • Nathan Bouk
  • Hsiu-Chuan Chen
  • Paul A. Kitts Terence D. Murphy Kim D. Pruitt Françoise Thibaud-Nissen Derek Albracht Robert S. Fulton Milinn Kremitzki Vincent Magrini Chris Markovic Sean McGrath Karyn Meltz Steinberg Kate Auger William Chow Joanna Collins Glenn Harden Timothy Hubbard Sarah Pelan Jared T. Simpson Glen Threadgold James Torrance Jonathan M. Wood Laura Clarke Sergey Koren Matthew Boitano Paul Peluso Heng Li Chen-Shan Chin Adam M. Phillippy Richard Durbin
  • ... [+29 authors] ...,
  • Richard K. Wilson
  • Paul Flicek
  • Evan E. Eichler
  • Deanna M. Church
  • First Published April 10, 2017
Method

Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes

  • Dirk D. Dolle
  • Zhicheng Liu
  • Matthew Cotten
  • Jared T. Simpson
  • Zamin Iqbal
  • Richard Durbin
  • Shane A. McCarthy
  • Thomas M. Keane
  • First Published December 16, 2016
Resource

H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa

  • Nicola J. Mulder
  • Ezekiel Adebiyi
  • Raouf Alami
  • Alia Benkahla
  • James Brandful
  • Seydou Doumbia Dean Everett Faisal M. Fadlelmola Fatima Gaboun Simani Gaseitsiwe Hassan Ghazal Scott Hazelhurst Winston Hide Azeddine Ibrahimi Yasmina Jaufeerally Fakim C. Victor Jongeneel Fourie Joubert Samar Kassim Jonathan Kayondo Judit Kumuthini Sylvester Lyantagaye Julie Makani Ahmed Mansour Alzohairy Daniel Masiga Ahmed Moussa Oyekanmi Nash Odile Ouwe Missi Oukem-Boyer Ellis Owusu-Dabo Sumir Panji Hugh Patterton Fouzia Radouani Khalid Sadki Fouad Seghrouchni Özlem Tastan Bishop Nicki Tiffin Nzovu Ulenga Marion Adebiyi Azza E. Ahmed Rehab I. Ahmed Maaike Alearts Mohamed Alibi Shaun Aron Shakuntala Baichoo Hocine Bendou Gerrit Botha David Brown Emile Chimusa Alan Christoffels Jennifer Cornick Jean-Baka Domelevo Entfellner Chris Fields Anne Fischer Junaid Gamieldien Kais Ghedira Amel Ghouila Shannan Ho Sui Itunuoluwa Isewon Raphael Isokpehi Mahjoubeh Jalali Sefid Dashti Arox Kamng'ona Radhika S. Khetani Anmol Kiran Benard Kulohoma Benjamin Kumwenda Dan Lapine Liudmila Sergeevna Mainzer Suresh Maslamoney Mamana Mbiyavanga Ayton Meintjes Flora Elias Mlyango Bruno Mmbando Somia A. Mohammed Phelelani Mpangase Chisomo Msefula Siana Nkya Mtatiro Dunfunk Mugutso Zahra Mungloo-Dilmohammud Patrick Musicha Victoria Nembaware Victor Chukwudi Osamor Jelili Oyelade Gloria Rendon Gustavo A. Salazar Samson Pandam Salifu
  • ... [+79 authors] ...,
  • Raphael Sangeda
  • Oussema Souiai
  • Peter Van Heusden
  • Mamadou Wele
  • First Published December 1, 2015
Resource

Assemblathon 1: A competitive assessment of de novo short read assembly methods

  • Dent Earl
  • Keith Bradnam
  • John St. John
  • Aaron Darling
  • Dawei Lin
  • Joseph Fass Hung On Ken Yu Vince Buffalo Daniel R. Zerbino Mark Diekhans Ngan Nguyen Pramila Nuwantha Ariyaratne Wing-Kin Sung Zemin Ning Matthias Haimel Jared T. Simpson Nuno A. Fonseca İnanç Birol T. Roderick Docking Isaac Y. Ho Daniel S. Rokhsar Rayan Chikhi Dominique Lavenier Guillaume Chapuis Delphine Naquin Nicolas Maillet Michael C. Schatz David R. Kelley Adam M. Phillippy Sergey Koren Shiaw-Pyng Yang Wei Wu Wen-Chi Chou Anuj Srivastava Timothy I. Shaw J. Graham Ruby Peter Skewes-Cox Miguel Betegon Michelle T. Dimon Victor Solovyev Igor Seledtsov Petr Kosarev Denis Vorobyev Ricardo Ramirez-Gonzalez Richard Leggett Dan MacLean Fangfang Xia Ruibang Luo Zhenyu Li Yinlong Xie Binghang Liu Sante Gnerre Iain MacCallum Dariusz Przybylski Filipe J. Ribeiro Shuangye Yin Ted Sharpe Giles Hall Paul J. Kersey Richard Durbin Shaun D. Jackman Jarrod A. Chapman Xiaoqiu Huang Joseph L. DeRisi Mario Caccamo Yingrui Li David B. Jaffe
  • ... [+62 authors] ...,
  • Richard E. Green
  • David Haussler
  • Ian Korf
  • Benedict Paten
  • First Published September 16, 2011
Method

Revealing the genetic structure of a trait by sequencing a population under selection

  • Leopold Parts
  • Francisco A. Cubillos
  • Jonas Warringer
  • Kanika Jain
  • Francisco Salinas
  • Suzannah J. Bumpstead Mikael Molin Amin Zia Jared T. Simpson Michael A. Quail
  • ... [+5 authors] ...,
  • Alan Moses
  • Edward J. Louis
  • Richard Durbin
  • Gianni Liti
  • First Published March 21, 2011
Resource

ABySS: A parallel assembler for short read sequence data

  • Jared T. Simpson
  • Kim Wong
  • Shaun D. Jackman
  • Jacqueline E. Schein
  • Steven J.M. Jones
  • İnanç Birol
  • First Published February 27, 2009
RESOURCE

eVOC: A Controlled Vocabulary for Unifying Gene Expression Data

  • Janet Kelso
  • Johann Visagie
  • Gregory Theiler
  • Alan Christoffels
  • Soraya Bardien
  • Damian Smedley Darren Otgaar Gary Greyling
  • ... [+3 authors] ...,
  • C. Victor Jongeneel
  • Mark I. McCarthy
  • Tania Hide
  • Winston Hide
  • First Published June 1, 2003
RESOURCE

Assembly, Verification, and Initial Annotation of the NIA Mouse 7.4K cDNA Clone Set

  • Vincent VanBuren
  • Yulan Piao
  • Dawood B. Dudekula
  • Yong Qian
  • Mark G. Carter
  • Patrick R. Martin Carole A. Stagg Uwem C. Bassey Kazuhiro Aiba Toshio Hamatani George J. Kargul
  • ... [+6 authors] ...,
  • Amber G. Luo
  • Janet Kelso
  • Winston Hide
  • Minoru S.H. Ko
  • First Published November 12, 2002
METHODS

d2_cluster: A Validated Method for Clustering EST and Full-Length cDNA Sequences

  • John Burke
  • Dan Davison
  • Winston Hide
  • First Published November 1, 1999
Letter

Alternative Gene Form Discovery and Candidate Gene Selection from Gene Indexing Projects

  • John Burke
  • Hui Wang
  • Winston Hide
  • Daniel B. Davison
  • First Published March 1, 1998
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