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Resource

C. elegans balancer strains reveals previously unappreciated complex genomic rearrangements" > Genome sequencing of C. elegans balancer strains reveals previously unappreciated complex genomic rearrangements

  • Tatiana Maroilley
  • Stephane Flibotte
  • Francesca Jean
  • Victoria Rodrigues Alves Barbosa
  • Andrew Galbraith
  • Afiya Razia Chida Filip Cotra Xiao Li
  • ... [+3 authors] ...,
  • Larisa Oncea
  • Mark Edgley
  • Don Moerman
  • Maja Tarailo-Graovac
  • First Published December 5, 2022
Research

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

  • Myungjin Jo
  • Ah Young Chung
  • Nozomu Yachie
  • Minchul Seo
  • Hyejin Jeon
  • Youngpyo Nam Yeojin Seo Eunmi Kim Quan Zhong
  • ... [+4 authors] ...,
  • Marc Vidal
  • Hae Chul Park
  • Frederick P. Roth
  • Kyoungho Suk
  • First Published June 8, 2017
Resource

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

  • Valerie A. Schneider
  • Tina Graves-Lindsay
  • Kerstin Howe
  • Nathan Bouk
  • Hsiu-Chuan Chen
  • Paul A. Kitts Terence D. Murphy Kim D. Pruitt Françoise Thibaud-Nissen Derek Albracht Robert S. Fulton Milinn Kremitzki Vincent Magrini Chris Markovic Sean McGrath Karyn Meltz Steinberg Kate Auger William Chow Joanna Collins Glenn Harden Timothy Hubbard Sarah Pelan Jared T. Simpson Glen Threadgold James Torrance Jonathan M. Wood Laura Clarke Sergey Koren Matthew Boitano Paul Peluso Heng Li Chen-Shan Chin Adam M. Phillippy Richard Durbin
  • ... [+29 authors] ...,
  • Richard K. Wilson
  • Paul Flicek
  • Evan E. Eichler
  • Deanna M. Church
  • First Published April 10, 2017
Resource

Burkholderia cenocepacia during long-term chronic infection of cystic fibrosis lungs" > Phenotypic diversity and genotypic flexibility of Burkholderia cenocepacia during long-term chronic infection of cystic fibrosis lungs

  • Amy Huei-Yi Lee
  • Stephane Flibotte
  • Sunita Sinha
  • Adrianna Paiero
  • Rachel L. Ehrlich
  • Sergey Balashov
  • ... [+1 authors] ...,
  • Garth D. Ehrlich
  • James E.A. Zlosnik
  • Joshua Chang Mell
  • Corey Nislow
  • First Published March 21, 2017
Method

Using reference-free compressed data structures to analyze sequencing reads from thousands of human genomes

  • Dirk D. Dolle
  • Zhicheng Liu
  • Matthew Cotten
  • Jared T. Simpson
  • Zamin Iqbal
  • Richard Durbin
  • Shane A. McCarthy
  • Thomas M. Keane
  • First Published December 16, 2016
Method

An extended set of yeast-based functional assays accurately identifies human disease mutations

  • Song Sun
  • Fan Yang
  • Guihong Tan
  • Michael Costanzo
  • Rose Oughtred
  • Jodi Hirschman Chandra L. Theesfeld Pritpal Bansal Nidhi Sahni Song Yi Analyn Yu Tanya Tyagi Cathy Tie David E. Hill Marc Vidal
  • ... [+10 authors] ...,
  • Brenda J. Andrews
  • Charles Boone
  • Kara Dolinski
  • Frederick P. Roth
  • First Published March 14, 2016
Resource

Caenorhabditis elegans" > The million mutation project: A new approach to genetics in Caenorhabditis elegans

  • Owen Thompson
  • Mark Edgley
  • Pnina Strasbourger
  • Stephane Flibotte
  • Brent Ewing
  • Ryan Adair Vinci Au Iasha Chaudhry Lisa Fernando Harald Hutter Armelle Kieffer Joanne Lau Norris Lee Angela Miller Greta Raymant Bin Shen Jay Shendure Jon Taylor
  • ... [+13 authors] ...,
  • Emily H. Turner
  • LaDeana W. Hillier
  • Donald G. Moerman
  • Robert H. Waterston
  • First Published June 25, 2013
Resource

Assemblathon 1: A competitive assessment of de novo short read assembly methods

  • Dent Earl
  • Keith Bradnam
  • John St. John
  • Aaron Darling
  • Dawei Lin
  • Joseph Fass Hung On Ken Yu Vince Buffalo Daniel R. Zerbino Mark Diekhans Ngan Nguyen Pramila Nuwantha Ariyaratne Wing-Kin Sung Zemin Ning Matthias Haimel Jared T. Simpson Nuno A. Fonseca İnanç Birol T. Roderick Docking Isaac Y. Ho Daniel S. Rokhsar Rayan Chikhi Dominique Lavenier Guillaume Chapuis Delphine Naquin Nicolas Maillet Michael C. Schatz David R. Kelley Adam M. Phillippy Sergey Koren Shiaw-Pyng Yang Wei Wu Wen-Chi Chou Anuj Srivastava Timothy I. Shaw J. Graham Ruby Peter Skewes-Cox Miguel Betegon Michelle T. Dimon Victor Solovyev Igor Seledtsov Petr Kosarev Denis Vorobyev Ricardo Ramirez-Gonzalez Richard Leggett Dan MacLean Fangfang Xia Ruibang Luo Zhenyu Li Yinlong Xie Binghang Liu Sante Gnerre Iain MacCallum Dariusz Przybylski Filipe J. Ribeiro Shuangye Yin Ted Sharpe Giles Hall Paul J. Kersey Richard Durbin Shaun D. Jackman Jarrod A. Chapman Xiaoqiu Huang Joseph L. DeRisi Mario Caccamo Yingrui Li David B. Jaffe
  • ... [+62 authors] ...,
  • Richard E. Green
  • David Haussler
  • Ian Korf
  • Benedict Paten
  • First Published September 16, 2011
Method

Revealing the genetic structure of a trait by sequencing a population under selection

  • Leopold Parts
  • Francisco A. Cubillos
  • Jonas Warringer
  • Kanika Jain
  • Francisco Salinas
  • Suzannah J. Bumpstead Mikael Molin Amin Zia Jared T. Simpson Michael A. Quail
  • ... [+5 authors] ...,
  • Alan Moses
  • Edward J. Louis
  • Richard Durbin
  • Gianni Liti
  • First Published March 21, 2011
Resource

C. elegans ORFeome" > Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome

  • Kourosh Salehi-Ashtiani
  • Chenwei Lin
  • Tong Hao
  • Yun Shen
  • David Szeto
  • Xinping Yang Lila Ghamsari HanJoo Lee Changyu Fan Ryan R. Murray Stuart Milstein Nenad Svrzikapa
  • ... [+7 authors] ...,
  • Michael E. Cusick
  • Frederick P. Roth
  • David E. Hill
  • Marc Vidal
  • First Published October 2, 2009
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