Search | Genome Research

Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages" > Sequence analysis in Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages

Jennifer F. Hughes
Helen Skaletsky
Tatyana Pyntikova
Natalia Koutseva
Terje Raudsepp
Laura G. Brown Daniel W. Bellott Ting-Jan Cho Shannon Dugan-Rocha Ziad Khan Colin Kremitzki Catrina Fronick Tina A. Graves-Lindsay Lucinda Fulton Wesley C. Warren Richard K. Wilson Elaine Owens James E. Womack William J. Murphy Donna M. Muzny
... [+15 authors] ...,
Kim C. Worley
Bhanu P. Chowdhary
Richard A. Gibbs
David C. Page

First Published November 18, 2020

Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data

John Huddleston
Mark J.P. Chaisson
Karyn Meltz Steinberg
Wes Warren
Kendra Hoekzema
David Gordon Tina A. Graves-Lindsay Katherine M. Munson Zev N. Kronenberg Laura Vives Paul Peluso Matthew Boitano
... [+7 authors] ...,
Chen-Shin Chin
Jonas Korlach
Richard K. Wilson
Evan E. Eichler

First Published January 2, 2018

Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

Mario Ventura
Claudia R. Catacchio
Saba Sajjadian
Laura Vives
Peter H. Sudmant
Tomas Marques-Bonet
Tina A. Graves
Richard K. Wilson
Evan E. Eichler

First Published September 1, 2017

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

Valerie A. Schneider
Tina Graves-Lindsay
Kerstin Howe
Nathan Bouk
Hsiu-Chuan Chen
Paul A. Kitts Terence D. Murphy Kim D. Pruitt Françoise Thibaud-Nissen Derek Albracht Robert S. Fulton Milinn Kremitzki Vincent Magrini Chris Markovic Sean McGrath Karyn Meltz Steinberg Kate Auger William Chow Joanna Collins Glenn Harden Timothy Hubbard Sarah Pelan Jared T. Simpson Glen Threadgold James Torrance Jonathan M. Wood Laura Clarke Sergey Koren Matthew Boitano Paul Peluso Heng Li Chen-Shan Chin Adam M. Phillippy Richard Durbin
... [+29 authors] ...,
Richard K. Wilson
Paul Flicek
Evan E. Eichler
Deanna M. Church

First Published April 10, 2017

Discovery and genotyping of structural variation from long-read haploid genome sequence data

John Huddleston
Mark J.P. Chaisson
Karyn Meltz Steinberg
Wes Warren
Kendra Hoekzema
David Gordon Tina A. Graves-Lindsay Katherine M. Munson Zev N. Kronenberg Laura Vives Paul Peluso Matthew Boitano
... [+7 authors] ...,
Chen-Shin Chin
Jonas Korlach
Richard K. Wilson
Evan E. Eichler

First Published November 28, 2016

Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region

Kiana Mohajeri
Stuart Cantsilieris
John Huddleston
Bradley J. Nelson
Bradley P. Coe
Catarina D. Campbell Carl Baker Lana Harshman Katherine M. Munson Zev N. Kronenberg Milinn Kremitzki Archana Raja Claudia Rita Catacchio
... [+8 authors] ...,
Tina A. Graves
Richard K. Wilson
Mario Ventura
Evan E. Eichler

First Published October 7, 2016

Pangolin genomes and the evolution of mammalian scales and immunity

Siew Woh Choo
Mike Rayko
Tze King Tan
Ranjeev Hari
Aleksey Komissarov
Wei Yee Wee Andrey A. Yurchenko Sergey Kliver Gaik Tamazian Agostinho Antunes Richard K. Wilson Wesley C. Warren Klaus-Peter Koepfli Patrick Minx Ksenia Krasheninnikova Antoinette Kotze Desire L. Dalton Elaine Vermaak Ian C. Paterson Pavel Dobrynin Frankie Thomas Sitam Jeffrine J. Rovie-Ryan Warren E. Johnson Aini Mohamed Yusoff Shu-Jin Luo Kayal Vizi Karuppannan Gang Fang Deyou Zheng
... [+23 authors] ...,
Mark B. Gerstein
Leonard Lipovich
Stephen J. O'Brien
Guat Jah Wong

First Published August 10, 2016

INTEGRATE: gene fusion discovery using whole genome and transcriptome data

Jin Zhang
Nicole M. White
Heather K. Schmidt
Robert S. Fulton
Chad Tomlinson
Wesley C. Warren
Richard K. Wilson
Christopher A. Maher

First Published November 10, 2015

Chlorocebus aethiops sabaeus)" > The genome of the vervet (Chlorocebus aethiops sabaeus)

Wesley C. Warren
Anna J. Jasinska
Raquel García-Pérez
Hannes Svardal
Chad Tomlinson
Mariano Rocchi Nicoletta Archidiacono Oronzo Capozzi Patrick Minx Michael J. Montague Kim Kyung LaDeana W. Hillier Milinn Kremitzki Tina Graves Colby Chiang Jennifer Hughes Nam Tran Yu Huang Vasily Ramensky Oi-wa Choi Yoon J. Jung Christopher A. Schmitt Nikoleta Juretic Jessica Wasserscheid Trudy R. Turner Roger W. Wiseman Jennifer J. Tuscher Julie A. Karl Jörn E. Schmitz Roland Zahn David H. O'Connor Eugene Redmond Alex Nisbett Béatrice Jacquelin Michaela C. Müller-Trutwin Jason M. Brenchley Michel Dione Martin Antonio Gary P. Schroth Jay R. Kaplan Matthew J. Jorgensen Gregg W.C. Thomas Matthew W. Hahn Brian J. Raney Bronwen Aken Rishi Nag Juergen Schmitz Gennady Churakov Angela Noll Roscoe Stanyon David Webb Francoise Thibaud-Nissen Magnus Nordborg Tomas Marques-Bonet
... [+49 authors] ...,
Ken Dewar
George M. Weinstock
Richard K. Wilson
Nelson B. Freimer

First Published September 16, 2015

Single haplotype assembly of the human genome from a hydatidiform mole

Karyn Meltz Steinberg
Valerie A. Schneider
Tina A. Graves-Lindsay
Robert S. Fulton
Richa Agarwala
John Huddleston Sergey A. Shiryev Aleksandr Morgulis Urvashi Surti
... [+4 authors] ...,
Wesley C. Warren
Deanna M. Church
Evan E. Eichler
Richard K. Wilson

First Published November 4, 2014

Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline

Nicholas Stong
Zhong Deng
Ravi Gupta
Sufen Hu
Shiela Paul
Amber K. Weiner Evan E. Eichler Tina Graves Catrina C. Fronick Laura Courtney
... [+5 authors] ...,
Richard K. Wilson
Paul M. Lieberman
Ramana V. Davuluri
Harold Riethman

First Published March 27, 2014

Reconstructing complex regions of genomes using long-read sequencing technology

John Huddleston
Swati Ranade
Maika Malig
Francesca Antonacci
Mark Chaisson
Lawrence Hon Peter H. Sudmant Tina A. Graves Can Alkan Megan Y. Dennis
... [+5 authors] ...,
Richard K. Wilson
Stephen W. Turner
Jonas Korlach
Evan E. Eichler

First Published January 13, 2014

MuSiC: Identifying mutational significance in cancer genomes

Nathan D. Dees
Qunyuan Zhang
Cyriac Kandoth
Michael C. Wendl
William Schierding
Daniel C. Koboldt Thomas B. Mooney Matthew B. Callaway
... [+3 authors] ...,
David Dooling
Elaine R. Mardis
Richard K. Wilson
Li Ding

First Published July 3, 2012

The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

Mario Ventura
Claudia R. Catacchio
Saba Sajjadian
Laura Vives
Peter H. Sudmant
Tomas Marques-Bonet
Tina A. Graves
Richard K. Wilson
Evan E. Eichler

First Published March 14, 2012

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

Daniel C. Koboldt
Qunyuan Zhang
David E. Larson
Dong Shen
Michael D. McLellan
Ling Lin
... [+1 authors] ...,
Christopher A. Miller
Elaine R. Mardis
Li Ding
Richard K. Wilson

First Published February 2, 2012

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

Mario Ventura
Claudia R. Catacchio
Can Alkan
Tomas Marques-Bonet
Saba Sajjadian
Tina A. Graves Fereydoun Hormozdiari Arcadi Navarro Maika Malig Carl Baker Choli Lee Emily H. Turner Lin Chen Jeffrey M. Kidd
... [+9 authors] ...,
Nicoletta Archidiacono
Jay Shendure
Richard K. Wilson
Evan E. Eichler

First Published June 17, 2011

Sequencing human–gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites

Santhosh Girirajan
Lin Chen
Tina Graves
Tomas Marques-Bonet
Mario Ventura
Catrina Fronick Lucinda Fulton Mariano Rocchi
... [+3 authors] ...,
Robert S. Fulton
Richard K. Wilson
Elaine R. Mardis
Evan E. Eichler

First Published November 24, 2008

Haplotype sorting using human fosmid clone end-sequence pairs

Jeffrey M. Kidd
Ze Cheng
Tina Graves
Bob Fulton
Richard K. Wilson
Evan E. Eichler

First Published October 3, 2008

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

Elliott H. Margulies
Gregory M. Cooper
George Asimenos
Daryl J. Thomas
Colin N. Dewey
Adam Siepel Ewan Birney Damian Keefe Ariel S. Schwartz Minmei Hou James Taylor Sergey Nikolaev Juan I. Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham James B. Brown Peter Bickel Ian Holmes James C. Mullikin Abel Ureta-Vidal Benedict Paten Eric A. Stone Kate R. Rosenbloom W. James Kent Gerard G. Bouffard Xiaobin Guan Nancy F. Hansen Jacquelyn R. Idol Valerie V.B. Maduro Baishali Maskeri Jennifer C. McDowell Morgan Park Pamela J. Thomas Alice C. Young Robert W. Blakesley Donna M. Muzny Erica Sodergren David A. Wheeler Kim C. Worley Huaiyang Jiang George M. Weinstock Richard A. Gibbs Tina Graves Robert Fulton Elaine R. Mardis Richard K. Wilson Michele Clamp James Cuff Sante Gnerre David B. Jaffe Jean L. Chang Kerstin Lindblad-Toh Eric S. Lander Angie Hinrichs Heather Trumbower Hiram Clawson Ann Zweig Robert M. Kuhn Galt Barber Rachel Harte Donna Karolchik Matthew A. Field Richard A. Moore Carrie A. Matthewson Jacqueline E. Schein Marco A. Marra Stylianos E. Antonarakis Serafim Batzoglou Nick Goldman Ross Hardison David Haussler
... [+68 authors] ...,
Webb Miller
Lior Pachter
Eric D. Green
Arend Sidow

First Published June 13, 2007

PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data

Ken Chen
Michael D. McLellan
Li Ding
Michael C. Wendl
Yumi Kasai
Richard K. Wilson
Elaine R. Mardis

First Published April 6, 2007

Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling

Jacob G. Bundy
Balázs Papp
Rebecca Harmston
Roy A. Browne
Edward M. Clayson
Nicola Burton
Richard J. Reece
Stephen G. Oliver
Kevin M. Brindle

First Published March 5, 2007

Molecular refinement of gibbon genome rearrangements

Roberta Roberto
Oronzo Capozzi
Richard K. Wilson
Elaine R. Mardis
Mariana Lomiento
Eray Tuzun Ze Cheng
... [+2 authors] ...,
Alan R. Mootnick
Nicoletta Archidiacono
Mariano Rocchi
Evan E. Eichler

First Published December 21, 2006

Physical map-assisted whole-genome shotgun sequence assemblies

René L. Warren
Dmitry Varabei
Darren Platt
Xiaoqiu Huang
David Messina
Shiaw-Pyng Yang James W. Kronstad Martin Krzywinski Wesley C. Warren John W. Wallis LaDeana W. Hillier Asif T. Chinwalla Jacqueline E. Schein
... [+8 authors] ...,
Asim S. Siddiqui
Marco A. Marra
Richard K. Wilson
Steven J.M. Jones

First Published June 1, 2006

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

Adam Siepel
Gill Bejerano
Jakob S. Pedersen
Angie S. Hinrichs
Minmei Hou
Kate Rosenbloom Hiram Clawson John Spieth LaDeana W. Hillier Stephen Richards George M. Weinstock Richard K. Wilson
... [+7 authors] ...,
Richard A. Gibbs
W. James Kent
Webb Miller
David Haussler

First Published July 15, 2005

Punctuated duplication seeding events during the evolution of human chromosome 2p11

Julie E. Horvath
Cassandra L. Gulden
Rhea U. Vallente
Marla Y. Eichler
Mario Ventura
John D. McPherson Tina A. Graves
... [+2 authors] ...,
Richard K. Wilson
Stuart Schwartz
Mariano Rocchi
Evan E. Eichler

First Published June 17, 2005

Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana" > Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana

Manpreet S. Katari
Vivekanand Balija
Richard K. Wilson
Robert A. Martienssen
W. Richard McCombie

First Published April 1, 2005

EAnnot: A genome annotation tool using experimental evidence

Li Ding
Aniko Sabo
Nicolas Berkowicz
Rekha R. Meyer
Yoram Shotland
Mark R. Johnson
Kymberlie H. Pepin
Richard K. Wilson
John Spieth

First Published December 1, 2004

Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing

Terrence S. Furey
Mark Diekhans
Yontao Lu
Tina A. Graves
Lachlan Oddy
Jennifer Randall-Maher
LaDeana W. Hillier
Richard K. Wilson
David Haussler

First Published October 15, 2004

The repetitive landscape of the chicken genome

Thomas Wicker
Jon S. Robertson
Stefan R. Schulze
F. Alex Feltus
Vincent Magrini
Jason A. Morrison Elaine R. Mardis
... [+2 authors] ...,
Richard K. Wilson
Daniel G. Peterson
Andrew H. Paterson
Robert Ivarie

First Published July 15, 2004

What is Finished, and Why Does it Matter

Elaine Mardis
John McPherson
Robert Martienssen
Richard K. Wilson
W. Richard McCombie

First Published May 1, 2002

Theories and Applications for Sequencing Randomly Selected Clones

Michael C. Wendl
Marco A. Marra
LaDeana W. Hillier
Asif T. Chinwalla
Richard K. Wilson
Robert H. Waterston

First Published January 18, 2001

A Pneumatic Device for Rapid Loading of DNA Sequencing Gels

Dimitrios A. Panussis
Mark W. Cook
Lisa L. Rifkin
Jacqueline E. Snider
Joseph T. Strong
Rebecca M. McGrane
Richard K. Wilson
Elaine R. Mardis

First Published May 1, 1998

High Throughput Fingerprint Analysis of Large-Insert Clones

Marco A. Marra
Tamara A. Kucaba
Nicole L. Dietrich
Eric D. Green
Buddy Brownstein
Richard K. Wilson
... [+1 authors] ...,
Ken M. McDonald
LaDeana W. Hillier
John D. McPherson
Robert H. Waterston

First Published November 1, 1997

A Transposon-Based Strategy for Sequencing Repetitive DNA in Eukaryotic Genomes

Scott E. Devine
Stephanie L. Chissoe
Yolanda Eby
Richard K. Wilson
Jef D. Boeke

First Published May 1, 1997

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Your search for returned 34 results

Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages" > Sequence analysis in Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages

Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data

Corrigendum: The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly

Discovery and genotyping of structural variation from long-read haploid genome sequence data

Interchromosomal core duplicons drive both evolutionary instability and disease susceptibility of the Chromosome 8p23.1 region

Pangolin genomes and the evolution of mammalian scales and immunity

INTEGRATE: gene fusion discovery using whole genome and transcriptome data

Chlorocebus aethiops sabaeus)" > The genome of the vervet (Chlorocebus aethiops sabaeus)

Single haplotype assembly of the human genome from a hydatidiform mole

Subtelomeric CTCF and cohesin binding site organization using improved subtelomere assemblies and a novel annotation pipeline

Reconstructing complex regions of genomes using long-read sequencing technology

MuSiC: Identifying mutational significance in cancer genomes

The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

Gorilla genome structural variation reveals evolutionary parallelisms with chimpanzee

Sequencing human–gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites

Haplotype sorting using human fosmid clone end-sequence pairs

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data

Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling

Molecular refinement of gibbon genome rearrangements

Physical map-assisted whole-genome shotgun sequence assemblies

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

Punctuated duplication seeding events during the evolution of human chromosome 2p11

Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana" > Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana

EAnnot: A genome annotation tool using experimental evidence

Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing

The repetitive landscape of the chicken genome

What is Finished, and Why Does it Matter

Theories and Applications for Sequencing Randomly Selected Clones

A Pneumatic Device for Rapid Loading of DNA Sequencing Gels

High Throughput Fingerprint Analysis of Large-Insert Clones

A Transposon-Based Strategy for Sequencing Repetitive DNA in Eukaryotic Genomes

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Your search for returned 34 results