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Method

Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs

Michiel de Hoon
Alessandro Bonetti
Charles Plessy
Yoshinari Ando
Chung-Chau Hon
Yuri Ishizu Masayoshi Itoh Sachi Kato Dongyan Lin Sho Maekawa Mitsuyoshi Murata Hiromi Nishiyori Jay W. Shin Jens Stolte Ana Maria Suzuki Michihira Tagami Hazuki Takahashi Supat Thongjuea
... [+13 authors] ...,
Alistair R.R. Forrest
Yoshihide Hayashizaki
Juha Kere
Piero Carninci

First Published August 12, 2022

Resource

A single-cell tumor immune atlas for precision oncology

Paula Nieto
Marc Elosua-Bayes
Juan L. Trincado
Domenica Marchese
Ramon Massoni-Badosa
Maria Salvany Ana Henriques Juan Nieto Sergio Aguilar-Fernández Elisabetta Mereu Catia Moutinho Sara Ruiz Patricia Lorden Vanessa T. Chin Dominik Kaczorowski Chia-Ling Chan Richard Gallagher Angela Chou Ester Planas-Rigol Carlota Rubio-Perez Ivo Gut Josep M. Piulats
... [+17 authors] ...,
Joan Seoane
Joseph E. Powell
Eduard Batlle
Holger Heyn

First Published September 21, 2021

Research

Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma

Raquel Ordoñez
Marta Kulis
Nuria Russiñol
Vicente Chapaprieta
Arantxa Carrasco-Leon
Beatriz García-Torre Stella Charalampopoulou Guillem Clot Renée Beekman Cem Meydan Martí Duran-Ferrer Núria Verdaguer-Dot Roser Vilarrasa-Blasi Paula Soler-Vila Leire Garate Estíbaliz Miranda Edurne San José-Enériz Juan R. Rodriguez-Madoz Teresa Ezponda Rebeca Martínez-Turrilas Amaia Vilas-Zornoza David Lara-Astiaso Daphné Dupéré-Richer Joost H.A. Martens Halima El-Omri Ruba Y. Taha Maria J. Calasanz Bruno Paiva Jesus San Miguel Paul Flicek Ivo Gut Ari Melnick Constantine S. Mitsiades Jonathan D. Licht Elias Campo
... [+30 authors] ...,
Hendrik G. Stunnenberg
Xabier Agirre
Felipe Prosper
Jose I. Martin-Subero

First Published August 20, 2020

Research

Comparative transcriptomics of primary cells in vertebrates

Tanvir Alam
Saumya Agrawal
Jessica Severin
Robert S. Young
Robin Andersson
Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
... [+16 authors] ...,
Levon M. Khachigian
Yoshihide Hayashizaki
Piero Carninci
Michiel J.L. de Hoon

First Published July 27, 2020

Method

bigSCale: an analytical framework for big-scale single-cell data

Giovanni Iacono
Elisabetta Mereu
Amy Guillaumet-Adkins
Roser Corominas
Ivon Cuscó
Gustavo Rodríguez-Esteban
... [+1 authors] ...,
Marta Gut
Luis Alberto Pérez-Jurado
Ivo Gut
Holger Heyn

First Published May 3, 2018

Research

In vivo binding of PRDM9 reveals interactions with noncanonical genomic sites

Corinne Grey
Julie A.J. Clément
Jérôme Buard
Benjamin Leblanc
Ivo Gut
Marta Gut
Laurent Duret
Bernard de Massy

First Published March 23, 2017

Research

The frequent evolutionary birth and death of functional promoters in mouse and human

Robert S. Young
Yoshihide Hayashizaki
Robin Andersson
Albin Sandelin
Hideya Kawaji
Masayoshi Itoh Timo Lassmann
... [+2 authors] ...,
Piero Carninci
Wendy A. Bickmore
Alistair R. Forrest
Martin S. Taylor

First Published July 30, 2015

Method

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

Hideya Kawaji
Marina Lizio
Masayoshi Itoh
Mutsumi Kanamori-Katayama
Ai Kaiho
Hiromi Nishiyori-Sueki Jay W. Shin Miki Kojima-Ishiyama Mitsuoki Kawano Mitsuyoshi Murata Noriko Ninomiya-Fukuda Sachi Ishikawa-Kato Sayaka Nagao-Sato
... [+8 authors] ...,
Shohei Noma
Yoshihide Hayashizaki
Alistair R.R. Forrest
Piero Carninci

First Published March 27, 2014

Research

Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia

Pedro G. Ferreira
Pedro Jares
Daniel Rico
Gonzalo Gómez-López
Alejandra Martínez-Trillos
Neus Villamor Simone Ecker Abel González-Pérez David G. Knowles Jean Monlong Rory Johnson Victor Quesada Sarah Djebali Panagiotis Papasaikas Mónica López-Guerra Dolors Colomer Cristina Royo Maite Cazorla Magda Pinyol Guillem Clot Marta Aymerich Maria Rozman Marta Kulis David Tamborero Anaïs Gouin Julie Blanc Marta Gut Ivo Gut Xose S. Puente David G. Pisano José Ignacio Martin-Subero Nuria López-Bigas Armando López-Guillermo
... [+28 authors] ...,
Alfonso Valencia
Carlos López-Otín
Elías Campo
Roderic Guigó

First Published November 21, 2013

Research

CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters

Romain Fenouil
Pierre Cauchy
Frederic Koch
Nicolas Descostes
Joaquin Zacarias Cabeza
Charlène Innocenti Pierre Ferrier
... [+2 authors] ...,
Salvatore Spicuglia
Marta Gut
Ivo Gut
Jean-Christophe Andrau

First Published October 25, 2012

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