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Research

Epigenetic characterization of pseudogenes across human tissues

  • Yunzhe Jiang
  • Beatrice Borsari
  • Mark Gerstein
  • First Published April 15, 2026
Resource

A map of enhancer regions in primary human neural progenitor cells using capture STARR-seq

  • Sophia C. Gaynor-Gillett
  • Lijun Cheng
  • Manman Shi
  • Jason Liu
  • Gaoyuan Wang
  • Megan Spector Qiuyu Guo Le Qi Mary Flaherty Martha Wall Ahyeon Hwang Mengting Gu Zhanlin Chen Yuhang Chen Jennifer R. Moran Jing Zhang
  • ... [+11 authors] ...,
  • Donghoon Lee
  • Mark Gerstein
  • Daniel Geschwind
  • Kevin P. White
  • First Published July 11, 2025
Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Resource

A single-cell tumor immune atlas for precision oncology

  • Paula Nieto
  • Marc Elosua-Bayes
  • Juan L. Trincado
  • Domenica Marchese
  • Ramon Massoni-Badosa
  • Maria Salvany Ana Henriques Juan Nieto Sergio Aguilar-Fernández Elisabetta Mereu Catia Moutinho Sara Ruiz Patricia Lorden Vanessa T. Chin Dominik Kaczorowski Chia-Ling Chan Richard Gallagher Angela Chou Ester Planas-Rigol Carlota Rubio-Perez Ivo Gut Josep M. Piulats
  • ... [+17 authors] ...,
  • Joan Seoane
  • Joseph E. Powell
  • Eduard Batlle
  • Holger Heyn
  • First Published September 21, 2021
Research

Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma

  • Raquel Ordoñez
  • Marta Kulis
  • Nuria Russiñol
  • Vicente Chapaprieta
  • Arantxa Carrasco-Leon
  • Beatriz García-Torre Stella Charalampopoulou Guillem Clot Renée Beekman Cem Meydan Martí Duran-Ferrer Núria Verdaguer-Dot Roser Vilarrasa-Blasi Paula Soler-Vila Leire Garate Estíbaliz Miranda Edurne San José-Enériz Juan R. Rodriguez-Madoz Teresa Ezponda Rebeca Martínez-Turrilas Amaia Vilas-Zornoza David Lara-Astiaso Daphné Dupéré-Richer Joost H.A. Martens Halima El-Omri Ruba Y. Taha Maria J. Calasanz Bruno Paiva Jesus San Miguel Paul Flicek Ivo Gut Ari Melnick Constantine S. Mitsiades Jonathan D. Licht Elias Campo
  • ... [+30 authors] ...,
  • Hendrik G. Stunnenberg
  • Xabier Agirre
  • Felipe Prosper
  • Jose I. Martin-Subero
  • First Published August 20, 2020
Method

bigSCale: an analytical framework for big-scale single-cell data

  • Giovanni Iacono
  • Elisabetta Mereu
  • Amy Guillaumet-Adkins
  • Roser Corominas
  • Ivon Cuscó
  • Gustavo Rodríguez-Esteban
  • ... [+1 authors] ...,
  • Marta Gut
  • Luis Alberto Pérez-Jurado
  • Ivo Gut
  • Holger Heyn
  • First Published May 3, 2018
Research

Mus caroli and Mus pahari genomes" > Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes

  • David Thybert
  • Maša Roller
  • Fábio C.P. Navarro
  • Ian Fiddes
  • Ian Streeter
  • Christine Feig David Martin-Galvez Mikhail Kolmogorov Václav Janoušek Wasiu Akanni Bronwen Aken Sarah Aldridge Varshith Chakrapani William Chow Laura Clarke Carla Cummins Anthony Doran Matthew Dunn Leo Goodstadt Kerstin Howe Matthew Howell Ambre-Aurore Josselin Robert C. Karn Christina M. Laukaitis Lilue Jingtao Fergal Martin Matthieu Muffato Stefanie Nachtweide Michael A. Quail Cristina Sisu Mario Stanke Klara Stefflova Cock Van Oosterhout Frederic Veyrunes Ben Ward Fengtang Yang Golbahar Yazdanifar Amonida Zadissa David J. Adams Alvis Brazma Mark Gerstein Benedict Paten
  • ... [+37 authors] ...,
  • Son Pham
  • Thomas M. Keane
  • Duncan T. Odom
  • Paul Flicek
  • First Published March 21, 2018
Research

In vivo binding of PRDM9 reveals interactions with noncanonical genomic sites

  • Corinne Grey
  • Julie A.J. Clément
  • Jérôme Buard
  • Benjamin Leblanc
  • Ivo Gut
  • Marta Gut
  • Laurent Duret
  • Bernard de Massy
  • First Published March 23, 2017
Research

One thousand somatic SNVs per skin fibroblast cell set baseline of mosaic mutational load with patterns that suggest proliferative origin

  • Alexej Abyzov
  • Livia Tomasini
  • Bo Zhou
  • Nikolaos Vasmatzis
  • Gianfilippo Coppola
  • Mariangela Amenduni Reenal Pattni Michael Wilson
  • ... [+3 authors] ...,
  • Mark Gerstein
  • Sherman Weissman
  • Alexander E. Urban
  • Flora M. Vaccarino
  • First Published February 24, 2017
Research

Transcriptome characterization by RNA sequencing identifies a major molecular and clinical subdivision in chronic lymphocytic leukemia

  • Pedro G. Ferreira
  • Pedro Jares
  • Daniel Rico
  • Gonzalo Gómez-López
  • Alejandra Martínez-Trillos
  • Neus Villamor Simone Ecker Abel González-Pérez David G. Knowles Jean Monlong Rory Johnson Victor Quesada Sarah Djebali Panagiotis Papasaikas Mónica López-Guerra Dolors Colomer Cristina Royo Maite Cazorla Magda Pinyol Guillem Clot Marta Aymerich Maria Rozman Marta Kulis David Tamborero Anaïs Gouin Julie Blanc Marta Gut Ivo Gut Xose S. Puente David G. Pisano José Ignacio Martin-Subero Nuria López-Bigas Armando López-Guillermo
  • ... [+28 authors] ...,
  • Alfonso Valencia
  • Carlos López-Otín
  • Elías Campo
  • Roderic Guigó
  • First Published November 21, 2013
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