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Research

Epigenetic characterization of pseudogenes across human tissues

  • Yunzhe Jiang
  • Beatrice Borsari
  • Mark Gerstein
  • First Published April 15, 2026
Resource

Quadrupia provides a comprehensive catalog of G-quadruplexes across genomes from the tree of life

  • Nikol Chantzi
  • Akshatha Nayak
  • Fotis A. Baltoumas
  • Eleni Aplakidou
  • Shiau Wei Liew
  • Jesslyn Elvaretta Galuh Michail Patsakis Austin Montgomery Camille Moeckel Ioannis Mouratidis Saiful Arefeen Sazed Wilfried Guiblet Panagiotis Karmiris-Obratański Guliang Wang Apostolos Zaravinos
  • ... [+10 authors] ...,
  • Karen M. Vasquez
  • Chun Kit Kwok
  • Georgios A. Pavlopoulos
  • Ilias Georgakopoulos-Soares
  • First Published August 26, 2025
Resource

MPRAbase a Massively Parallel Reporter Assay database

  • Jingjing Zhao
  • Fotis A Baltoumas
  • Maxwell A Konnaris
  • Ioannis Mouratidis
  • Zhe Liu
  • Jasmine Sims
  • ... [+1 authors] ...,
  • Vikram Agarwal
  • Georgios A Pavlopoulos
  • Ilias Georgakopoulos-Soares
  • Nadav Ahituv
  • First Published April 22, 2025
Method

Identification of the shortest species-specific oligonucleotide sequences

  • Ioannis Mouratidis
  • Maxwell A. Konnaris
  • Nikol Chantzi
  • Candace S.Y. Chan
  • Michail Patsakis
  • Kimonas Provatas Austin Montgomery Fotis A. Baltoumas Congzhou M. Sha
  • ... [+4 authors] ...,
  • Manvita Mareboina
  • Georgios A. Pavlopoulos
  • Dionysios V. Chartoumpekis
  • Ilias Georgakopoulos-Soares
  • First Published January 2, 2025
Resource

Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships" > Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Resource

Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs

  • Ashlyn G. Anderson
  • Belle A. Moyers
  • Jacob M. Loupe
  • Ivan Rodriguez-Nunez
  • Stephanie A. Felker
  • James M.J. Lawlor William E. Bunney Blynn G. Bunney Preston M. Cartagena Adolfo Sequeira Stanley J. Watson
  • ... [+6 authors] ...,
  • Huda Akil
  • Eric M. Mendenhall
  • Gregory M. Cooper
  • Richard M. Myers
  • First Published August 16, 2024
Research

Characterization of human transcription factor function and patterns of gene regulation in HepG2 cells

  • Belle A. Moyers
  • E. Christopher Partridge
  • Mark Mackiewicz
  • Michael J. Betti
  • Roshan Darji
  • Sarah K. Meadows Kimberly M. Newberry
  • ... [+2 authors] ...,
  • Laurel A. Brandsmeier
  • Barbara J. Wold
  • Eric M. Mendenhall
  • Richard M. Myers
  • First Published October 18, 2023
In memoriam

C. Thomas Caskey (1938–2022)

  • Richard A. Gibbs
  • Aravinda Chakravarti
  • Evan E. Eichler
  • Eric D. Green
  • Richard M. Myers
  • Anne C. Ferguson-Smith
  • Kateryna D. Makova
  • Hillary E. Sussman
  • First Published February 17, 2022
In memoriam

Deborah A. Nickerson (1954 –2021)

  • Aravinda Chakravarti
  • Evan E. Eichler
  • Richard A. Gibbs
  • Eric D. Green
  • Richard M. Myers
  • Hillary E. Sussman
  • First Published January 24, 2022
Research

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021
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