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Research

Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation

  • Vanessa L. Porter
  • Michelle Ng
  • Kieran O'Neill
  • Signe MacLennan
  • Richard D. Corbett
  • Luka Culibrk Zeid Hamadeh Marissa Iden Rachel Schmidt Shirng-Wern Tsaih Carolyn Nakisige Martin Origa Jackson Orem Glenn Chang Jeremy Fan Ka Ming Nip Vahid Akbari Simon K. Chan James Hopkins Richard A. Moore Eric Chuah Karen L. Mungall Andrew J. Mungall
  • ... [+18 authors] ...,
  • Inanc Birol
  • Steven J.M. Jones
  • Janet S. Rader
  • Marco A. Marra
  • First Published December 5, 2024
Resource

The western redcedar genome reveals low genetic diversity in a self-compatible conifer

  • Tal J. Shalev
  • Omnia Gamal El-Dien
  • Macaire M.S. Yuen
  • Shu Shengqiang
  • Shaun D. Jackman
  • René L. Warren Lauren Coombe Lise van der Merwe Ada Stewart Lori B. Boston Christopher Plott Jerry Jenkins Guifen He Juying Yan Mi Yan Jie Guo Jesse W. Breinholt Leandro G. Neves Jane Grimwood Loren H. Rieseberg Jeremy Schmutz Inanc Birol Matias Kirst
  • ... [+18 authors] ...,
  • Alvin D. Yanchuk
  • Carol Ritland
  • John H. Russell
  • Joerg Bohlmann
  • First Published September 15, 2022
Method

RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes

  • Ka Ming Nip
  • Readman Chiu
  • Chen Yang
  • Justin Chu
  • Hamid Mohamadi
  • René L. Warren
  • Inanc Birol
  • First Published August 17, 2020
Method

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

  • Shaun D. Jackman
  • Benjamin P. Vandervalk
  • Hamid Mohamadi
  • Justin Chu
  • Sarah Yeo
  • S. Austin Hammond Golnaz Jahesh
  • ... [+2 authors] ...,
  • Hamza Khan
  • Lauren Coombe
  • Rene L. Warren
  • Inanc Birol
  • First Published February 23, 2017
Research

Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

  • Brad G. Hoffman
  • Gordon Robertson
  • Bogard Zavaglia
  • Mike Beach
  • Rebecca Cullum
  • Sam Lee Galina Soukhatcheva Leping Li Elizabeth D. Wederell Nina Thiessen Mikhail Bilenky Timothee Cezard Angela Tam Baljit Kamoh Inanc Birol Derek Dai YongJun Zhao Martin Hirst C. Bruce Verchere
  • ... [+14 authors] ...,
  • Cheryl D. Helgason
  • Marco A. Marra
  • Steven J.M. Jones
  • Pamela A. Hoodless
  • First Published June 15, 2010
LETTER

Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding

  • A. Gordon Robertson
  • Mikhail Bilenky
  • Angela Tam
  • Yongjun Zhao
  • Thomas Zeng
  • Nina Thiessen Timothee Cezard Anthony P. Fejes Elizabeth D. Wederell Rebecca Cullum Ghia Euskirchen Martin Krzywinski Inanc Birol Michael Snyder
  • ... [+9 authors] ...,
  • Pamela A. Hoodless
  • Martin Hirst
  • Marco A. Marra
  • Steven J.M. Jones
  • First Published September 11, 2008
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