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Research

Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation

Vanessa L. Porter
Michelle Ng
Kieran O'Neill
Signe MacLennan
Richard D. Corbett
Luka Culibrk Zeid Hamadeh Marissa Iden Rachel Schmidt Shirng-Wern Tsaih Carolyn Nakisige Martin Origa Jackson Orem Glenn Chang Jeremy Fan Ka Ming Nip Vahid Akbari Simon K. Chan James Hopkins Richard A. Moore Eric Chuah Karen L. Mungall Andrew J. Mungall
... [+18 authors] ...,
Inanc Birol
Steven J.M. Jones
Janet S. Rader
Marco A. Marra

First Published December 5, 2024

Resource

The western redcedar genome reveals low genetic diversity in a self-compatible conifer

Tal J. Shalev
Omnia Gamal El-Dien
Macaire M.S. Yuen
Shu Shengqiang
Shaun D. Jackman
René L. Warren Lauren Coombe Lise van der Merwe Ada Stewart Lori B. Boston Christopher Plott Jerry Jenkins Guifen He Juying Yan Mi Yan Jie Guo Jesse W. Breinholt Leandro G. Neves Jane Grimwood Loren H. Rieseberg Jeremy Schmutz Inanc Birol Matias Kirst
... [+18 authors] ...,
Alvin D. Yanchuk
Carol Ritland
John H. Russell
Joerg Bohlmann

First Published September 15, 2022

Method

RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes

Ka Ming Nip
Readman Chiu
Chen Yang
Justin Chu
Hamid Mohamadi
René L. Warren
Inanc Birol

First Published August 17, 2020

Research

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

Myungjin Jo
Ah Young Chung
Nozomu Yachie
Minchul Seo
Hyejin Jeon
Youngpyo Nam Yeojin Seo Eunmi Kim Quan Zhong
... [+4 authors] ...,
Marc Vidal
Hae Chul Park
Frederick P. Roth
Kyoungho Suk

First Published June 8, 2017

Method

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

Shaun D. Jackman
Benjamin P. Vandervalk
Hamid Mohamadi
Justin Chu
Sarah Yeo
S. Austin Hammond Golnaz Jahesh
... [+2 authors] ...,
Hamza Khan
Lauren Coombe
Rene L. Warren
Inanc Birol

First Published February 23, 2017

Method

An extended set of yeast-based functional assays accurately identifies human disease mutations

Song Sun
Fan Yang
Guihong Tan
Michael Costanzo
Rose Oughtred
Jodi Hirschman Chandra L. Theesfeld Pritpal Bansal Nidhi Sahni Song Yi Analyn Yu Tanya Tyagi Cathy Tie David E. Hill Marc Vidal
... [+10 authors] ...,
Brenda J. Andrews
Charles Boone
Kara Dolinski
Frederick P. Roth

First Published March 14, 2016

Research

Great ape Y Chromosome and mitochondrial DNA phylogenies reflect subspecies structure and patterns of mating and dispersal

Pille Hallast
Pierpaolo Maisano Delser
Chiara Batini
Daniel Zadik
Mariano Rocchi
Werner Schempp
Chris Tyler-Smith
Mark A. Jobling

First Published February 16, 2016

Resource

A comprehensive molecular cytogenetic analysis of chromosome rearrangements in gibbons

Oronzo Capozzi
Lucia Carbone
Roscoe R. Stanyon
Annamaria Marra
Fengtang Yang
Christopher W. Whelan
Pieter J. de Jong
Mariano Rocchi
Nicoletta Archidiacono

First Published August 14, 2012

Research

Copy number variation analysis in the great apes reveals species-specific patterns of structural variation

Elodie Gazave
Fleur Darré
Carlos Morcillo-Suarez
Natalia Petit-Marty
Angel Carreño
Urko M. Marigorta Oliver A. Ryder Antoine Blancher Mariano Rocchi Elena Bosch
... [+5 authors] ...,
Carl Baker
Tomàs Marquès-Bonet
Evan E. Eichler
Arcadi Navarro

First Published August 8, 2011

Research

Gene amplification as double minutes or homogeneously staining regions in solid tumors: Origin and structure

Clelia Tiziana Storlazzi
Angelo Lonoce
Maria C. Guastadisegni
Domenico Trombetta
Pietro D'Addabbo
Giulia Daniele Alberto L'Abbate Gemma Macchia Cecilia Surace Klaas Kok Reinhard Ullmann Stefania Purgato
... [+7 authors] ...,
Orazio Palumbo
Massimo Carella
Peter F. Ambros
Mariano Rocchi

First Published July 14, 2010

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