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Research

Cyanophora paradoxa reveals unique repair signature" > Elevated DNA insertion rate in Cyanophora paradoxa reveals unique repair signature

  • Marc Krasovec
  • Anna Lipzen
  • Nigel Grimsley
  • Gilles Mirambeau
  • Kerrie Barry
  • Igor V. Grigoriev
  • Gwenael Piganeau
  • First Published June 12, 2026
Research

Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation

  • Vanessa L. Porter
  • Michelle Ng
  • Kieran O'Neill
  • Signe MacLennan
  • Richard D. Corbett
  • Luka Culibrk Zeid Hamadeh Marissa Iden Rachel Schmidt Shirng-Wern Tsaih Carolyn Nakisige Martin Origa Jackson Orem Glenn Chang Jeremy Fan Ka Ming Nip Vahid Akbari Simon K. Chan James Hopkins Richard A. Moore Eric Chuah Karen L. Mungall Andrew J. Mungall
  • ... [+18 authors] ...,
  • Inanc Birol
  • Steven J.M. Jones
  • Janet S. Rader
  • Marco A. Marra
  • First Published December 5, 2024
Research

High-resolution structural genomics reveals new therapeutic vulnerabilities in glioblastoma

  • Michael J. Johnston
  • Ana Nikolic
  • Nicoletta Ninkovic
  • Paul Guilhamon
  • Florence M.G. Cavalli
  • Steven Seaman Franz J. Zemp John Lee Aly Abdelkareem Katrina Ellestad Alex Murison Michelle M. Kushida Fiona J. Coutinho Yussanne Ma Andrew J. Mungall Richard Moore Marco A. Marra Michael D. Taylor Peter B. Dirks Trevor J. Pugh Sorana Morrissy
  • ... [+16 authors] ...,
  • Bradley St Croix
  • Douglas J. Mahoney
  • Mathieu Lupien
  • Marco Gallo
  • First Published June 27, 2019
Method

Genome-reconstruction for eukaryotes from complex natural microbial communities

  • Patrick T. West
  • Alexander J. Probst
  • Igor V. Grigoriev
  • Brian C. Thomas
  • Jillian F. Banfield
  • First Published March 1, 2018
Method

TITAN: inference of copy number architectures in clonal cell populations from tumor whole-genome sequence data

  • Gavin Ha
  • Andrew Roth
  • Jaswinder Khattra
  • Julie Ho
  • Damian Yap
  • Leah M. Prentice Nataliya Melnyk Andrew McPherson Ali Bashashati Emma Laks Justina Biele Jiarui Ding Alan Le Jamie Rosner Karey Shumansky Marco A. Marra C. Blake Gilks
  • ... [+12 authors] ...,
  • David G. Huntsman
  • Jessica N. McAlpine
  • Samuel Aparicio
  • Sohrab P. Shah
  • First Published July 24, 2014
Method

Functional DNA methylation differences between tissues, cell types, and across individuals discovered using the M&M algorithm

  • Bo Zhang
  • Yan Zhou
  • Nan Lin
  • Rebecca F. Lowdon
  • Chibo Hong
  • Raman P. Nagarajan Jeffrey B. Cheng Daofeng Li Michael Stevens Hyung Joo Lee Xiaoyun Xing Jia Zhou Vasavi Sundaram GiNell Elliott Junchen Gu Taoping Shi Philippe Gascard Mahvash Sigaroudinia Thea D. Tlsty Theresa Kadlecek Arthur Weiss Henriette O’Geen Peggy J. Farnham Cécile L. Maire Keith L. Ligon Pamela A.F. Madden Angela Tam Richard Moore Martin Hirst
  • ... [+24 authors] ...,
  • Marco A. Marra
  • Baoxue Zhang
  • Joseph F. Costello
  • Ting Wang
  • First Published June 26, 2013
Method

Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods

  • Michael Stevens
  • Jeffrey B. Cheng
  • Daofeng Li
  • Mingchao Xie
  • Chibo Hong
  • Cécile L. Maire Keith L. Ligon
  • ... [+2 authors] ...,
  • Martin Hirst
  • Marco A. Marra
  • Joseph F. Costello
  • Ting Wang
  • First Published June 26, 2013
Method

Integrative analysis of genome-wide loss of heterozygosity and monoallelic expression at nucleotide resolution reveals disrupted pathways in triple-negative breast cancer

  • Gavin Ha
  • Andrew Roth
  • Daniel Lai
  • Ali Bashashati
  • Jiarui Ding
  • Rodrigo Goya Ryan Giuliany Jamie Rosner Arusha Oloumi Karey Shumansky Suet-Feung Chin Gulisa Turashvili Martin Hirst
  • ... [+8 authors] ...,
  • Carlos Caldas
  • Marco A. Marra
  • Samuel Aparicio
  • Sohrab P. Shah
  • First Published May 25, 2012
Research

Extensive relationship between antisense transcription and alternative splicing in the human genome

  • A. Sorana Morrissy
  • Malachi Griffith
  • Marco A. Marra
  • First Published June 30, 2011
Research

Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88" > Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88

  • Mikael R. Andersen
  • Margarita P. Salazar
  • Peter J. Schaap
  • Peter J.I. van de Vondervoort
  • David Culley
  • Jette Thykaer Jens C. Frisvad Kristian F. Nielsen Richard Albang Kaj Albermann Randy M. Berka Gerhard H. Braus Susanna A. Braus-Stromeyer Luis M. Corrochano Ziyu Dai Piet W.M. van Dijck Gerald Hofmann Linda L. Lasure Jon K. Magnuson Hildegard Menke Martin Meijer Susan L. Meijer Jakob B. Nielsen Michael L. Nielsen Albert J.J. van Ooyen Herman J. Pel Lars Poulsen Rob A. Samson Hein Stam Adrian Tsang Johannes M. van den Brink Alex Atkins Andrea Aerts Harris Shapiro Jasmyn Pangilinan Asaf Salamov Yigong Lou Erika Lindquist Susan Lucas Jane Grimwood Igor V. Grigoriev Christian P. Kubicek Diego Martinez
  • ... [+38 authors] ...,
  • Noël N.M.E. van Peij
  • Johannes A. Roubos
  • Jens Nielsen
  • Scott E. Baker
  • First Published May 4, 2011
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