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Method

Detection of long repeat expansions from PCR-free whole-genome sequence data

Egor Dolzhenko
Joke J.F.A. van Vugt
Richard J. Shaw
Mitchell A. Bekritsky
Marka van Blitterswijk
Giuseppe Narzisi Subramanian S. Ajay Vani Rajan Bryan R. Lajoie Nathan H. Johnson Zoya Kingsbury Sean J. Humphray Raymond D. Schellevis William J. Brands Matt Baker Rosa Rademakers Maarten Kooyman Gijs H.P. Tazelaar Michael A. van Es Russell McLaughlin William Sproviero Aleksey Shatunov Ashley Jones Ahmad Al Khleifat Alan Pittman Sarah Morgan Orla Hardiman Ammar Al-Chalabi Chris Shaw Bradley Smith Edmund J. Neo Karen Morrison Pamela J. Shaw Catherine Reeves Lara Winterkorn Nancy S. Wexler David E. Housman Christopher W. Ng Alina L. Li Ryan J. Taft
... [+35 authors] ...,
Leonard H. van den Berg
David R. Bentley
Jan H. Veldink
Michael A. Eberle

First Published September 8, 2017

Resource

A reference data set of 5.4 million phased human variants validated by genetic inheritance from sequencing a three-generation 17-member pedigree

Michael A. Eberle
Epameinondas Fritzilas
Peter Krusche
Morten Källberg
Benjamin L. Moore
Mitchell A. Bekritsky Zamin Iqbal Han-Yu Chuang Sean J. Humphray Aaron L. Halpern
... [+5 authors] ...,
Semyon Kruglyak
Elliott H. Margulies
Gil McVean
David R. Bentley

First Published November 30, 2016

Letter

Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level

Alexander W. Bruce
Andrés J. López-Contreras
Paul Flicek
Thomas A. Down
Pawandeep Dhami
Shane C. Dillon Christoph M. Koch
... [+2 authors] ...,
Cordelia F. Langford
Ian Dunham
Robert M. Andrews
David Vetrie

First Published April 28, 2009

LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

David S. Johnson
Wei Li
D. Benjamin Gordon
Arindam Bhattacharjee
Bo Curry
Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
... [+39 authors] ...,
Kevin Struhl
Richard M. Myers
Jason D. Lieb
X. Shirley Liu

First Published February 7, 2008

ARTICLE

Butyrate mediates decrease of histone acetylation centered on transcription start sites and down-regulation of associated genes

Alvaro Rada-Iglesias
Stefan Enroth
Adam Ameur
Christoph M. Koch
Gayle K. Clelland
Patricia Respuela-Alonso Sarah Wilcox Oliver M. Dovey Peter D. Ellis
... [+4 authors] ...,
Cordelia F. Langford
Ian Dunham
Jan Komorowski
Claes Wadelius

First Published June 13, 2007

ARTICLE

The landscape of histone modifications across 1% of the human genome in five human cell lines

Christoph M. Koch
Robert M. Andrews
Paul Flicek
Shane C. Dillon
Ulaş Karaöz
Gayle K. Clelland Sarah Wilcox David M. Beare Joanna C. Fowler Phillippe Couttet Keith D. James Gregory C. Lefebvre Alexander W. Bruce Oliver M. Dovey Peter D. Ellis Pawandeep Dhami Cordelia F. Langford Zhiping Weng
... [+13 authors] ...,
Ewan Birney
Nigel P. Carter
David Vetrie
Ian Dunham

First Published June 13, 2007

Methods

Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites

George A. Follows
Pawan Dhami
Berthold Göttgens
Alexander W. Bruce
Peter J. Campbell
Shane C. Dillon Aileen M. Smith Christoph Koch Ian J. Donaldson Mike A. Scott
... [+5 authors] ...,
Ian Dunham
Mary E. Janes
David Vetrie
Anthony R. Green

First Published September 8, 2006

LETTER

The portability of tagSNPs across populations: A worldwide survey

Anna González-Neira
Xiayi Ke
Oscar Lao
Francesc Calafell
Arcadi Navarro
David Comas Howard Cann Suzannah Bumpstead Jilur Ghori Sarah Hunt
... [+5 authors] ...,
Panos Deloukas
Ian Dunham
Lon R. Cardon
Jaume Bertranpetit

First Published February 8, 2006

LETTER

Genomic regions exhibiting positive selection identified from dense genotype data

Christopher S. Carlson
Daryl J. Thomas
Michael A. Eberle
Johanna E. Swanson
Robert J. Livingston
Mark J. Rieder
Deborah A. Nickerson

First Published October 26, 2005

ARTICLE

Canis familiaris" > Extensive and breed-specific linkage disequilibrium in Canis familiaris

Nathan B. Sutter
Michael A. Eberle
Heidi G. Parker
Barbara J. Pullar
Ewen F. Kirkness
Leonid Kruglyak
Elaine A. Ostrander

First Published November 15, 2004

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