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Research

Evidence for compensatory evolution within pleiotropic regulatory elements

Zane Kliesmete
Peter Orchard
Victor Yan Kin Lee
Johanna Geuder
Simon M. Krauß
Mari Ohnuki
... [+1 authors] ...,
Jessica Jocher
Beate Vieth
Wolfgang Enard
Ines Hellmann

First Published September 10, 2024

Review

Population genetic inference from genomic sequence variation

John E. Pool
Ines Hellmann
Jeffrey D. Jensen
Rasmus Nielsen

First Published January 12, 2010

Letter

Functional diversity for REST (NRSF) is defined by in vivo binding affinity hierarchies at the DNA sequence level

Alexander W. Bruce
Andrés J. López-Contreras
Paul Flicek
Thomas A. Down
Pawandeep Dhami
Shane C. Dillon Christoph M. Koch
... [+2 authors] ...,
Cordelia F. Langford
Ian Dunham
Robert M. Andrews
David Vetrie

First Published April 28, 2009

Letter

Darwinian and demographic forces affecting human protein coding genes

Rasmus Nielsen
Melissa J. Hubisz
Ines Hellmann
Dara Torgerson
Aida M. Andrés
Anders Albrechtsen Ryan Gutenkunst Mark D. Adams Michele Cargill
... [+4 authors] ...,
Adam Boyko
Amit Indap
Carlos D. Bustamante
Andrew G. Clark

First Published March 11, 2009

LETTER

Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals

Ines Hellmann
Yuan Mang
Zhiping Gu
Peter Li
Francisco M. de la Vega
Andrew G. Clark
Rasmus Nielsen

First Published April 14, 2008

LETTER

Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets

David S. Johnson
Wei Li
D. Benjamin Gordon
Arindam Bhattacharjee
Bo Curry
Jayati Ghosh Leonardo Brizuela Jason S. Carroll Myles Brown Paul Flicek Christoph M. Koch Ian Dunham Mark Bieda Xiaoqin Xu Peggy J. Farnham Philipp Kapranov David A. Nix Thomas R. Gingeras Xinmin Zhang Heather Holster Nan Jiang Roland D. Green Jun S. Song Scott A. McCuine Elizabeth Anton Loan Nguyen Nathan D. Trinklein Zhen Ye Keith Ching David Hawkins Bing Ren Peter C. Scacheri Joel Rozowsky Alexander Karpikov Ghia Euskirchen Sherman Weissman Mark Gerstein Michael Snyder Annie Yang Zarmik Moqtaderi Heather Hirsch Hennady P. Shulha Yutao Fu Zhiping Weng
... [+39 authors] ...,
Kevin Struhl
Richard M. Myers
Jason D. Lieb
X. Shirley Liu

First Published February 7, 2008

ARTICLE

Butyrate mediates decrease of histone acetylation centered on transcription start sites and down-regulation of associated genes

Alvaro Rada-Iglesias
Stefan Enroth
Adam Ameur
Christoph M. Koch
Gayle K. Clelland
Patricia Respuela-Alonso Sarah Wilcox Oliver M. Dovey Peter D. Ellis
... [+4 authors] ...,
Cordelia F. Langford
Ian Dunham
Jan Komorowski
Claes Wadelius

First Published June 13, 2007

ARTICLE

The landscape of histone modifications across 1% of the human genome in five human cell lines

Christoph M. Koch
Robert M. Andrews
Paul Flicek
Shane C. Dillon
Ulaş Karaöz
Gayle K. Clelland Sarah Wilcox David M. Beare Joanna C. Fowler Phillippe Couttet Keith D. James Gregory C. Lefebvre Alexander W. Bruce Oliver M. Dovey Peter D. Ellis Pawandeep Dhami Cordelia F. Langford Zhiping Weng
... [+13 authors] ...,
Ewan Birney
Nigel P. Carter
David Vetrie
Ian Dunham

First Published June 13, 2007

Methods

Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites

George A. Follows
Pawan Dhami
Berthold Göttgens
Alexander W. Bruce
Peter J. Campbell
Shane C. Dillon Aileen M. Smith Christoph Koch Ian J. Donaldson Mike A. Scott
... [+5 authors] ...,
Ian Dunham
Mary E. Janes
David Vetrie
Anthony R. Green

First Published September 8, 2006

LETTER

The portability of tagSNPs across populations: A worldwide survey

Anna González-Neira
Xiayi Ke
Oscar Lao
Francesc Calafell
Arcadi Navarro
David Comas Howard Cann Suzannah Bumpstead Jilur Ghori Sarah Hunt
... [+5 authors] ...,
Panos Deloukas
Ian Dunham
Lon R. Cardon
Jaume Bertranpetit

First Published February 8, 2006

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