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Method

Finished bacterial genomes from shotgun sequence data

  • Filipe J. Ribeiro
  • Dariusz Przybylski
  • Shuangye Yin
  • Ted Sharpe
  • Sante Gnerre
  • Amr Abouelleil Aaron M. Berlin Anna Montmayeur Terrance P. Shea Bruce J. Walker Sarah K. Young
  • ... [+6 authors] ...,
  • Carsten Russ
  • Chad Nusbaum
  • Iain MacCallum
  • David B. Jaffe
  • First Published July 24, 2012
Method

Paired-end sequencing of Fosmid libraries by Illumina

  • Louise J.S. Williams
  • Diana G. Tabbaa
  • Na Li
  • Aaron M. Berlin
  • Terrance P. Shea
  • Iain MacCallum Michael S. Lawrence Yotam Drier Gad Getz
  • ... [+4 authors] ...,
  • Sarah K. Young
  • David B. Jaffe
  • Chad Nusbaum
  • Andreas Gnirke
  • First Published July 16, 2012
Resource

Assemblathon 1: A competitive assessment of de novo short read assembly methods

  • Dent Earl
  • Keith Bradnam
  • John St. John
  • Aaron Darling
  • Dawei Lin
  • Joseph Fass Hung On Ken Yu Vince Buffalo Daniel R. Zerbino Mark Diekhans Ngan Nguyen Pramila Nuwantha Ariyaratne Wing-Kin Sung Zemin Ning Matthias Haimel Jared T. Simpson Nuno A. Fonseca İnanç Birol T. Roderick Docking Isaac Y. Ho Daniel S. Rokhsar Rayan Chikhi Dominique Lavenier Guillaume Chapuis Delphine Naquin Nicolas Maillet Michael C. Schatz David R. Kelley Adam M. Phillippy Sergey Koren Shiaw-Pyng Yang Wei Wu Wen-Chi Chou Anuj Srivastava Timothy I. Shaw J. Graham Ruby Peter Skewes-Cox Miguel Betegon Michelle T. Dimon Victor Solovyev Igor Seledtsov Petr Kosarev Denis Vorobyev Ricardo Ramirez-Gonzalez Richard Leggett Dan MacLean Fangfang Xia Ruibang Luo Zhenyu Li Yinlong Xie Binghang Liu Sante Gnerre Iain MacCallum Dariusz Przybylski Filipe J. Ribeiro Shuangye Yin Ted Sharpe Giles Hall Paul J. Kersey Richard Durbin Shaun D. Jackman Jarrod A. Chapman Xiaoqiu Huang Joseph L. DeRisi Mario Caccamo Yingrui Li David B. Jaffe
  • ... [+62 authors] ...,
  • Richard E. Green
  • David Haussler
  • Ian Korf
  • Benedict Paten
  • First Published September 16, 2011
RESOURCE

ALLPATHS: De novo assembly of whole-genome shotgun microreads

  • Jonathan Butler
  • Iain MacCallum
  • Michael Kleber
  • Ilya A. Shlyakhter
  • Matthew K. Belmonte
  • Eric S. Lander
  • Chad Nusbaum
  • David B. Jaffe
  • First Published March 13, 2008
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