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Method

Finished bacterial genomes from shotgun sequence data

  • Filipe J. Ribeiro
  • Dariusz Przybylski
  • Shuangye Yin
  • Ted Sharpe
  • Sante Gnerre
  • Amr Abouelleil Aaron M. Berlin Anna Montmayeur Terrance P. Shea Bruce J. Walker Sarah K. Young
  • ... [+6 authors] ...,
  • Carsten Russ
  • Chad Nusbaum
  • Iain MacCallum
  • David B. Jaffe
  • First Published July 24, 2012
Method

Paired-end sequencing of Fosmid libraries by Illumina

  • Louise J.S. Williams
  • Diana G. Tabbaa
  • Na Li
  • Aaron M. Berlin
  • Terrance P. Shea
  • Iain MacCallum Michael S. Lawrence Yotam Drier Gad Getz
  • ... [+4 authors] ...,
  • Sarah K. Young
  • David B. Jaffe
  • Chad Nusbaum
  • Andreas Gnirke
  • First Published July 16, 2012
Resource

Assemblathon 1: A competitive assessment of de novo short read assembly methods

  • Dent Earl
  • Keith Bradnam
  • John St. John
  • Aaron Darling
  • Dawei Lin
  • Joseph Fass Hung On Ken Yu Vince Buffalo Daniel R. Zerbino Mark Diekhans Ngan Nguyen Pramila Nuwantha Ariyaratne Wing-Kin Sung Zemin Ning Matthias Haimel Jared T. Simpson Nuno A. Fonseca İnanç Birol T. Roderick Docking Isaac Y. Ho Daniel S. Rokhsar Rayan Chikhi Dominique Lavenier Guillaume Chapuis Delphine Naquin Nicolas Maillet Michael C. Schatz David R. Kelley Adam M. Phillippy Sergey Koren Shiaw-Pyng Yang Wei Wu Wen-Chi Chou Anuj Srivastava Timothy I. Shaw J. Graham Ruby Peter Skewes-Cox Miguel Betegon Michelle T. Dimon Victor Solovyev Igor Seledtsov Petr Kosarev Denis Vorobyev Ricardo Ramirez-Gonzalez Richard Leggett Dan MacLean Fangfang Xia Ruibang Luo Zhenyu Li Yinlong Xie Binghang Liu Sante Gnerre Iain MacCallum Dariusz Przybylski Filipe J. Ribeiro Shuangye Yin Ted Sharpe Giles Hall Paul J. Kersey Richard Durbin Shaun D. Jackman Jarrod A. Chapman Xiaoqiu Huang Joseph L. DeRisi Mario Caccamo Yingrui Li David B. Jaffe
  • ... [+62 authors] ...,
  • Richard E. Green
  • David Haussler
  • Ian Korf
  • Benedict Paten
  • First Published September 16, 2011
RESOURCE

ALLPATHS: De novo assembly of whole-genome shotgun microreads

  • Jonathan Butler
  • Iain MacCallum
  • Michael Kleber
  • Ilya A. Shlyakhter
  • Matthew K. Belmonte
  • Eric S. Lander
  • Chad Nusbaum
  • David B. Jaffe
  • First Published March 13, 2008
LETTER

C. elegans core neuronal protein–DNA interaction network" > Transcription factor modularity in a gene-centered C. elegans core neuronal protein–DNA interaction network

  • Vanessa Vermeirssen
  • M. Inmaculada Barrasa
  • César A. Hidalgo
  • Jenny Aurielle B. Babon
  • Reynaldo Sequerra
  • Lynn Doucette-Stamm
  • Albert-László Barabási
  • Albertha J.M. Walhout
  • First Published May 18, 2007
RESOURCE

Caenorhabditis elegans Promoterome" > A First Version of the Caenorhabditis elegans Promoterome

  • Denis Dupuy
  • Qian-Ru Li
  • Bart Deplancke
  • Mike Boxem
  • Tong Hao
  • Philippe Lamesch Reynaldo Sequerra Stephanie Bosak Lynn Doucette-Stamm
  • ... [+4 authors] ...,
  • Ian A. Hope
  • David E. Hill
  • Albertha J.M. Walhout
  • Marc Vidal
  • First Published October 15, 2004
RESOURCE

Human ORFeome Version 1.1: A Platform for Reverse Proteomics

  • Jean-François Rual
  • Tomoko Hirozane-Kishikawa
  • Tong Hao
  • Nicolas Bertin
  • Siming Li
  • Amélie Dricot Ning Li Jennifer Rosenberg Philippe Lamesch Pierre-Olivier Vidalain Tracey R. Clingingsmith James L. Hartley Dominic Esposito David Cheo Troy Moore Blake Simmons Reynaldo Sequerra Stephanie Bosak Lynn Doucette-Stamm Christian Le Peuch Jean Vandenhaute
  • ... [+16 authors] ...,
  • Michael E. Cusick
  • Joanna S. Albala
  • David E. Hill
  • Marc Vidal
  • First Published October 15, 2004
RESOURCE

Brucella melitensis ORFeome Version 1.1" > Generation of the Brucella melitensis ORFeome Version 1.1

  • Amélie Dricot
  • Jean-François Rual
  • Philippe Lamesch
  • Nicolas Bertin
  • Denis Dupuy
  • Tong Hao Christophe Lambert Régis Hallez Jean-Marc Delroisse Jean Vandenhaute Ignacio Lopez-Goñi Ignacio Moriyon Juan M. Garcia-Lobo Félix J. Sangari Alastair P. MacMillan Sally J. Cutler Adrian M. Whatmore Stephanie Bozak Reynaldo Sequerra Lynn Doucette-Stamm
  • ... [+15 authors] ...,
  • Marc Vidal
  • David E. Hill
  • Jean-Jacques Letesson
  • Xavier De Bolle
  • First Published October 15, 2004
LETTER

C. elegans ORFeome Version 3.1: Increasing the Coverage of ORFeome Resources With Improved Gene Predictions" > C. elegans ORFeome Version 3.1: Increasing the Coverage of ORFeome Resources With Improved Gene Predictions

  • Philippe Lamesch
  • Stuart Milstein
  • Tong Hao
  • Jennifer Rosenberg
  • Ning Li
  • Reynaldo Sequerra Stephanie Bosak
  • ... [+2 authors] ...,
  • Lynn Doucette-Stamm
  • Jean Vandenhaute
  • David E. Hill
  • Marc Vidal
  • First Published October 15, 2004
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