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Method

CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing

  • Kaiyuan Zhu
  • Matthew G. Jones
  • Jens Luebeck
  • Xinxin Bu
  • Hyerim Yi
  • King L. Hung Ivy Tsz-Lo Wong
  • ... [+2 authors] ...,
  • Shu Zhang
  • Paul S. Mischel
  • Howard Y. Chang
  • Vineet Bafna
  • First Published July 9, 2024
Method

SeqFold: Genome-scale reconstruction of RNA secondary structure integrating high-throughput sequencing data

  • Zhengqing Ouyang
  • Michael P. Snyder
  • Howard Y. Chang
  • First Published October 11, 2012
Methods

Targeted screening of cis-regulatory variation in human haplotypes

  • Dominique J. Verlaan
  • Bing Ge
  • Elin Grundberg
  • Rose Hoberman
  • Kevin C.L. Lam
  • Vonda Koka Joana Dias Scott Gurd Nicolas W. Martin Hans Mallmin Olof Nilsson
  • ... [+6 authors] ...,
  • Eef Harmsen
  • Ken Dewar
  • Tony Kwan
  • Tomi Pastinen
  • First Published October 29, 2008
Methods

Systematic functional characterization of cis-regulatory motifs in human core promoters

  • Saurabh Sinha
  • Adam S. Adler
  • Yair Field
  • Howard Y. Chang
  • Eran Segal
  • First Published February 6, 2008
Methods

Heritability of alternative splicing in the human genome

  • Tony Kwan
  • David Benovoy
  • Christel Dias
  • Scott Gurd
  • David Serre
  • Harry Zuzan Tyson A. Clark Anthony Schweitzer Michelle K. Staples Hui Wang
  • ... [+5 authors] ...,
  • John E. Blume
  • Thomas J. Hudson
  • Rob Sladek
  • Jacek Majewski
  • First Published August 1, 2007
Methods

Survey of allelic expression using EST mining

  • Bing Ge
  • Scott Gurd
  • Tiffany Gaudin
  • Carole Dore
  • Pierre Lepage
  • Eef Harmsen
  • Thomas J. Hudson
  • Tomi Pastinen
  • First Published October 26, 2005
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