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Incomplete erasure of histone marks during epigenetic reprogramming in medaka early development

Hiroto S. Fukushima
Hiroyuki Takeda
Ryohei Nakamura

First Published April 28, 2023

Deep sequencing of short capped RNAs reveals novel families of noncoding RNAs

Michiel de Hoon
Alessandro Bonetti
Charles Plessy
Yoshinari Ando
Chung-Chau Hon
Yuri Ishizu Masayoshi Itoh Sachi Kato Dongyan Lin Sho Maekawa Mitsuyoshi Murata Hiromi Nishiyori Jay W. Shin Jens Stolte Ana Maria Suzuki Michihira Tagami Hazuki Takahashi Supat Thongjuea
... [+13 authors] ...,
Alistair R.R. Forrest
Yoshihide Hayashizaki
Juha Kere
Piero Carninci

First Published August 12, 2022

CTCF looping is established during gastrulation in medaka embryos

Ryohei Nakamura
Yuichi Motai
Masahiko Kumagai
Candice L. Wike
Haruyo Nishiyama
Yoichiro Nakatani Neva C. Durand Kaori Kondo Takashi Kondo Tatsuya Tsukahara Atsuko Shimada
... [+6 authors] ...,
Bradley R. Cairns
Erez Lieberman Aiden
Shinichi Morishita
Hiroyuki Takeda

First Published May 18, 2021

Chromatin architecture transitions from zebrafish sperm through early embryogenesis

Candice L. Wike
Yixuan Guo
Mengyao Tan
Ryohei Nakamura
Dana Klatt Shaw
Noelia Díaz Aneasha F. Whittaker-Tademy Neva C. Durand Erez Lieberman Aiden
... [+4 authors] ...,
Juan M. Vaquerizas
David Grunwald
Hiroyuki Takeda
Bradley R. Cairns

First Published May 18, 2021

Comparative transcriptomics of primary cells in vertebrates

Tanvir Alam
Saumya Agrawal
Jessica Severin
Robert S. Young
Robin Andersson
Erik Arner Akira Hasegawa Marina Lizio Jordan A. Ramilowski Imad Abugessaisa Yuri Ishizu Shohei Noma Hiroshi Tarui Martin S. Taylor Timo Lassmann Masayoshi Itoh Takeya Kasukawa Hideya Kawaji Luigi Marchionni Guojun Sheng Alistair R.R. Forrest
... [+16 authors] ...,
Levon M. Khachigian
Yoshihide Hayashizaki
Piero Carninci
Michiel J.L. de Hoon

First Published July 27, 2020

The frequent evolutionary birth and death of functional promoters in mouse and human

Robert S. Young
Yoshihide Hayashizaki
Robin Andersson
Albin Sandelin
Hideya Kawaji
Masayoshi Itoh Timo Lassmann
... [+2 authors] ...,
Piero Carninci
Wendy A. Bickmore
Alistair R. Forrest
Martin S. Taylor

First Published July 30, 2015

Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

Hideya Kawaji
Marina Lizio
Masayoshi Itoh
Mutsumi Kanamori-Katayama
Ai Kaiho
Hiromi Nishiyori-Sueki Jay W. Shin Miki Kojima-Ishiyama Mitsuoki Kawano Mitsuyoshi Murata Noriko Ninomiya-Fukuda Sachi Ishikawa-Kato Sayaka Nagao-Sato
... [+8 authors] ...,
Shohei Noma
Yoshihide Hayashizaki
Alistair R.R. Forrest
Piero Carninci

First Published March 27, 2014

Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns

Wei Qu
Shin-ichi Hashimoto
Atsuko Shimada
Yoichiro Nakatani
Kazuki Ichikawa
Taro L. Saito Katsumi Ogoshi Kouji Matsushima
... [+3 authors] ...,
Yutaka Suzuki
Sumio Sugano
Hiroyuki Takeda
Shinichi Morishita

First Published June 11, 2012

Promoter architecture of mouse olfactory receptor genes

Charles Plessy
Giovanni Pascarella
Nicolas Bertin
Altuna Akalin
Claudia Carrieri
Anne Vassalli Dejan Lazarevic Jessica Severin Christina Vlachouli Roberto Simone Geoffrey J. Faulkner Jun Kawai Carsten O. Daub Silvia Zucchelli Yoshihide Hayashizaki
... [+10 authors] ...,
Peter Mombaerts
Boris Lenhard
Stefano Gustincich
Piero Carninci

First Published December 22, 2011

Unamplified cap analysis of gene expression on a single-molecule sequencer

Mutsumi Kanamori-Katayama
Masayoshi Itoh
Hideya Kawaji
Timo Lassmann
Shintaro Katayama
Miki Kojima Nicolas Bertin Ai Kaiho Noriko Ninomiya
... [+4 authors] ...,
Carsten O. Daub
Piero Carninci
Alistair R.R. Forrest
Yoshihide Hayashizaki

First Published May 19, 2011

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