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Research

Incomplete erasure of histone marks during epigenetic reprogramming in medaka early development

  • Hiroto S. Fukushima
  • Hiroyuki Takeda
  • Ryohei Nakamura
  • First Published April 28, 2023
Research

CTCF looping is established during gastrulation in medaka embryos

  • Ryohei Nakamura
  • Yuichi Motai
  • Masahiko Kumagai
  • Candice L. Wike
  • Haruyo Nishiyama
  • Yoichiro Nakatani Neva C. Durand Kaori Kondo Takashi Kondo Tatsuya Tsukahara Atsuko Shimada
  • ... [+6 authors] ...,
  • Bradley R. Cairns
  • Erez Lieberman Aiden
  • Shinichi Morishita
  • Hiroyuki Takeda
  • First Published May 18, 2021
Research

Chromatin architecture transitions from zebrafish sperm through early embryogenesis

  • Candice L. Wike
  • Yixuan Guo
  • Mengyao Tan
  • Ryohei Nakamura
  • Dana Klatt Shaw
  • Noelia Díaz Aneasha F. Whittaker-Tademy Neva C. Durand Erez Lieberman Aiden
  • ... [+4 authors] ...,
  • Juan M. Vaquerizas
  • David Grunwald
  • Hiroyuki Takeda
  • Bradley R. Cairns
  • First Published May 18, 2021
Research

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

  • Myungjin Jo
  • Ah Young Chung
  • Nozomu Yachie
  • Minchul Seo
  • Hyejin Jeon
  • Youngpyo Nam Yeojin Seo Eunmi Kim Quan Zhong
  • ... [+4 authors] ...,
  • Marc Vidal
  • Hae Chul Park
  • Frederick P. Roth
  • Kyoungho Suk
  • First Published June 8, 2017
Method

An extended set of yeast-based functional assays accurately identifies human disease mutations

  • Song Sun
  • Fan Yang
  • Guihong Tan
  • Michael Costanzo
  • Rose Oughtred
  • Jodi Hirschman Chandra L. Theesfeld Pritpal Bansal Nidhi Sahni Song Yi Analyn Yu Tanya Tyagi Cathy Tie David E. Hill Marc Vidal
  • ... [+10 authors] ...,
  • Brenda J. Andrews
  • Charles Boone
  • Kara Dolinski
  • Frederick P. Roth
  • First Published March 14, 2016
Research

Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns

  • Wei Qu
  • Shin-ichi Hashimoto
  • Atsuko Shimada
  • Yoichiro Nakatani
  • Kazuki Ichikawa
  • Taro L. Saito Katsumi Ogoshi Kouji Matsushima
  • ... [+3 authors] ...,
  • Yutaka Suzuki
  • Sumio Sugano
  • Hiroyuki Takeda
  • Shinichi Morishita
  • First Published June 11, 2012
Resource

C. elegans ORFeome" > Large-scale RACE approach for proactive experimental definition of C. elegans ORFeome

  • Kourosh Salehi-Ashtiani
  • Chenwei Lin
  • Tong Hao
  • Yun Shen
  • David Szeto
  • Xinping Yang Lila Ghamsari HanJoo Lee Changyu Fan Ryan R. Murray Stuart Milstein Nenad Svrzikapa
  • ... [+7 authors] ...,
  • Michael E. Cusick
  • Frederick P. Roth
  • David E. Hill
  • Marc Vidal
  • First Published October 2, 2009
Resource

Analysis of the human E2 ubiquitin conjugating enzyme protein interaction network

  • Gabriel Markson
  • Christina Kiel
  • Russell Hyde
  • Stephanie Brown
  • Panagoula Charalabous
  • Anja Bremm Jennifer Semple Jonathan Woodsmith Simon Duley Kourosh Salehi-Ashtiani Marc Vidal
  • ... [+6 authors] ...,
  • David Komander
  • Luis Serrano
  • Paul Lehner
  • Christopher M. Sanderson
  • First Published June 23, 2009
Methods

Shifted Transversal Design smart-pooling for high coverage interactome mapping

  • Xiaofeng Xin
  • Jean-François Rual
  • Tomoko Hirozane-Kishikawa
  • David E. Hill
  • Marc Vidal
  • Charles Boone
  • Nicolas Thierry-Mieg
  • First Published May 15, 2009
LETTER

Saccharomyces cerevisiae predicted ORFeome" > Revisiting the Saccharomyces cerevisiae predicted ORFeome

  • Qian-Ru Li
  • Anne-Ruxandra Carvunis
  • Haiyuan Yu
  • Jing-Dong J. Han
  • Quan Zhong
  • Nicolas Simonis Stanley Tam Tong Hao Niels J. Klitgord Denis Dupuy Danny Mou Ilan Wapinski
  • ... [+7 authors] ...,
  • Aviv Regev
  • David E. Hill
  • Michael E. Cusick
  • Marc Vidal
  • First Published May 23, 2008
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