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Method

Multicondition and multimodal temporal profile inference during mouse embryonic development

  • Ran Zhang
  • Chengxiang Qiu
  • Galina N. Filippova
  • Gang Li
  • Jay Shendure
  • Jean-Philippe Vert
  • Xinxian Deng
  • William Stafford Noble
  • Christine M. Disteche
  • First Published August 14, 2025
Research

Dynamics of broad H3K4me3 domains uncover an epigenetic switch between cell identity and cancer-related genes

  • Mohamed Belhocine
  • Mathieu Simonin
  • José David Abad Flores
  • Agata Cieslak
  • Iris Manosalva
  • Lydie Pradel Charlotte Smith Eve-Lyne Mathieu Guillaume Charbonnier Joost H.A. Martens Hendrik G. Stunnenberg Muhammad Ahmad Maqbool Aneta Mikulasova Lisa J. Russell Daniel Rico
  • ... [+10 authors] ...,
  • Denis Puthier
  • Pierre Ferrier
  • Vahid Asnafi
  • Salvatore Spicuglia
  • First Published June 23, 2021
Resource

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

  • Timothy J. Durham
  • Riza M. Daza
  • Louis Gevirtzman
  • Darren A. Cusanovich
  • Olubusayo Bolonduro
  • William Stafford Noble
  • Jay Shendure
  • Robert H. Waterston
  • First Published April 22, 2021
Research

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021
Method

A plug and play microfluidic platform for standardized sensitive low-input chromatin immunoprecipitation

  • René A.M. Dirks
  • Peter C. Thomas
  • Haoyu Wu
  • Robert C. Jones
  • Hendrik G. Stunnenberg
  • Hendrik Marks
  • First Published March 11, 2021
Research

Chromatin activation as a unifying principle underlying pathogenic mechanisms in multiple myeloma

  • Raquel Ordoñez
  • Marta Kulis
  • Nuria Russiñol
  • Vicente Chapaprieta
  • Arantxa Carrasco-Leon
  • Beatriz García-Torre Stella Charalampopoulou Guillem Clot Renée Beekman Cem Meydan Martí Duran-Ferrer Núria Verdaguer-Dot Roser Vilarrasa-Blasi Paula Soler-Vila Leire Garate Estíbaliz Miranda Edurne San José-Enériz Juan R. Rodriguez-Madoz Teresa Ezponda Rebeca Martínez-Turrilas Amaia Vilas-Zornoza David Lara-Astiaso Daphné Dupéré-Richer Joost H.A. Martens Halima El-Omri Ruba Y. Taha Maria J. Calasanz Bruno Paiva Jesus San Miguel Paul Flicek Ivo Gut Ari Melnick Constantine S. Mitsiades Jonathan D. Licht Elias Campo
  • ... [+30 authors] ...,
  • Hendrik G. Stunnenberg
  • Xabier Agirre
  • Felipe Prosper
  • Jose I. Martin-Subero
  • First Published August 20, 2020
Research

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

  • Adebola Enikanolaiye
  • Julie Ruston
  • Rong Zeng
  • Christine Taylor
  • Marijke Schrock
  • Christie M. Buchovecky
  • Jay Shendure
  • Elif Acar
  • Monica J. Justice
  • First Published April 21, 2020
Research

The circular RNome of primary breast cancer

  • Marcel Smid
  • Saskia M. Wilting
  • Katharina Uhr
  • F. Germán Rodríguez-González
  • Vanja de Weerd
  • Wendy J.C. Prager-Van der Smissen Michelle van der Vlugt-Daane Anne van Galen Serena Nik-Zainal Adam Butler Sancha Martin Helen R. Davies Johan Staaf Marc J. van de Vijver Andrea L. Richardson Gaëten MacGrogan Roberto Salgado Gert G.G.M. van den Eynden Colin A. Purdie Alastair M. Thompson Carlos Caldas Paul N. Span Fred C.G.J. Sweep Peter T. Simpson Sunil R. Lakhani Steven Van Laere Christine Desmedt Angelo Paradiso Jorunn Eyfjord Annegien Broeks Anne Vincent-Salomon Andrew P. Futreal Stian Knappskog Tari King Alain Viari Anne-Lise Børresen-Dale Hendrik G. Stunnenberg
  • ... [+32 authors] ...,
  • Mike Stratton
  • John A. Foekens
  • Anieta M. Sieuwerts
  • John W.M. Martens
  • First Published January 28, 2019
Corrigendum

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published May 1, 2018
Research

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published November 9, 2016
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