Research
3C sites in poly(A) RNA" > Nanopore direct RNA sequencing reveals METTL2A-mediated m3C sites in poly(A) RNA
- First Published October 30, 2025
Research
Long-read genome sequencing and variant reanalysis increase diagnostic yield in neurodevelopmental disorders
- First Published September 19, 2024
Resource
Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs
- First Published August 16, 2024
Method
cis-regulatory elements" > Probabilistic association of differentially expressed genes with cis-regulatory elements
- First Published April 17, 2024
Research
Positive selective sweeps of epigenetic mutations regulating specialized metabolites in plants
- First Published May 18, 2021
Research
Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands
- First Published April 20, 2021
Research
Long-read sequencing for non-small-cell lung cancer genomes
- First Published September 4, 2020
Method
Metabolic labeling of RNA using multiple ribonucleoside analogs enables the simultaneous evaluation of RNA synthesis and degradation rates
- First Published August 25, 2020
Corrigendum
Plasmodium falciparum" > Corrigendum: Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum
- First Published August 1, 2018
Corrigendum
Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity
- First Published May 1, 2018
Resource
A genome-wide interactome of DNA-associated proteins in the human liver
- First Published October 11, 2017
Research
Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes
- First Published May 18, 2017
Research
A GC-rich sequence feature in the 3′ UTR directs UPF1-dependent mRNA decay in mammalian cells
- First Published December 9, 2016
Research
A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity
- First Published November 9, 2016
Resource
Ciona intestinalis" > Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis
- First Published December 14, 2015
Research
Promoter-distal RNA polymerase II binding discriminates active from inactive CCAAT/ enhancer-binding protein beta binding sites
- First Published October 20, 2015
Research
Plasmodium falciparum" > Interactive transcriptome analysis of malaria patients and infecting Plasmodium falciparum
- First Published August 4, 2014
Resource
Coelacanth genomes reveal signatures for evolutionary transition from water to land
- First Published July 22, 2013
Research
High-resolution DNA methylome analysis of primordial germ cells identifies gender-specific reprogramming in mice
- First Published February 14, 2013
Research
Genome-wide genetic variations are highly correlated with proximal DNA methylation patterns
- First Published June 11, 2012
Method
Genome-wide determination of RNA stability reveals hundreds of short-lived noncoding transcripts in mammals
- First Published February 27, 2012
Resource
Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis
- First Published March 3, 2011
Research
Nucleotide composition-linked divergence of vertebrate core promoter architecture
- First Published January 10, 2011
Letter
Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes
- First Published January 12, 2010
Methods
A method for rapid, targeted CNV genotyping identifies rare variants associated with neurocognitive disease
- First Published June 8, 2009
PERSPECTIVE
Qualifying the relationship between sequence conservation and molecular function
- First Published February 1, 2008
ARTICLE
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
- First Published June 13, 2007
LETTER
Distinct class of putative “non-conserved” promoters in humans: Comparative studies of alternative promoters of human and mouse genes
- First Published June 13, 2007
LETTER
Toxoplasma gondii" > Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii
- First Published August 10, 2006
LETTER
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
- First Published December 12, 2005
ARTICLE
Distribution and intensity of constraint in mammalian genomic sequence
- First Published June 17, 2005
LETTER
Analysis of Small Human Proteins Reveals the Translation of Upstream Open Reading Frames of mRNAs
- First Published October 15, 2004
LETTER
Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions
- First Published September 1, 2004
Methods
Automated Whole-Genome Multiple Alignment of Rat, Mouse, and Human
- First Published April 1, 2004
LETTER
Characterization of Evolutionary Rates and Constraints in Three Mammalian Genomes
- First Published April 1, 2004
LETTER
Quantitative Estimates of Sequence Divergence for Comparative Analyses of Mammalian Genomes
- First Published May 1, 2003
METHODS
LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA
- First Published March 12, 2003
RESOURCE
Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation" > Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation
- First Published January 1, 2003
REPORT
Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes
- First Published April 11, 2001
