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Long-read genome sequencing and variant reanalysis increase diagnostic yield in neurodevelopmental disorders

  • Susan M. Hiatt
  • James M.J. Lawlor
  • Lori H. Handley
  • Donald R. Latner
  • Zachary T. Bonnstetter
  • Candice R. Finnila Michelle L. Thompson Lori Beth Boston Melissa Williams Ivan Rodriguez Nunez Jerry Jenkins Whitley V. Kelley E. Martina Bebin Michael A. Lopez Anna C.E. Hurst
  • ... [+10 authors] ...,
  • Bruce R. Korf
  • Jeremy Schmutz
  • Jane Grimwood
  • Gregory M. Cooper
  • First Published September 19, 2024

Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs

  • Ashlyn G. Anderson
  • Belle A. Moyers
  • Jacob M. Loupe
  • Ivan Rodriguez-Nunez
  • Stephanie A. Felker
  • James M.J. Lawlor William E. Bunney Blynn G. Bunney Preston M. Cartagena Adolfo Sequeira Stanley J. Watson
  • ... [+6 authors] ...,
  • Huda Akil
  • Eric M. Mendenhall
  • Gregory M. Cooper
  • Richard M. Myers
  • First Published August 16, 2024

cis-regulatory elements" > Probabilistic association of differentially expressed genes with cis-regulatory elements

  • Brian S. Roberts
  • Ashlyn G. Anderson
  • E. Christopher Partridge
  • Gregory M. Cooper
  • Richard M. Myers
  • First Published April 17, 2024

Cancer-associated dynamics and potential regulators of intronic polyadenylation revealed by IPAFinder using standard RNA-seq data

  • Zhaozhao Zhao
  • Qiushi Xu
  • Ran Wei
  • Weixu Wang
  • Dong Ding
  • Yu Yang Jun Yao
  • ... [+2 authors] ...,
  • Liye Zhang
  • Yue-Qing Hu
  • Gang Wei
  • Ting Ni
  • First Published September 2, 2021

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021

Systematic evaluation of the effect of polyadenylation signal variants on the expression of disease-associated genes

  • Meng Chen
  • Ran Wei
  • Gang Wei
  • Mingqing Xu
  • Zhixi Su
  • Chen Zhao
  • Ting Ni
  • First Published April 19, 2021

Corrigendum: 3′ UTR lengthening as a novel mechanism in regulating cellular senescence

  • Meng Chen
  • Guoliang Lyu
  • Miao Han
  • Hongbo Nie
  • Ting Shen
  • Wei Chen Yichi Niu Yifan Song Xueping Li Huan Li Xinyu Chen Ziyue Wang Zheng Xia Wei Li Xiao-Li Tian Chen Ding Jun Gu Yufang Zheng Xinhua Liu
  • ... [+14 authors] ...,
  • Jinfeng Hu
  • Gang Wei
  • Wei Tao
  • Ting Ni
  • First Published September 14, 2020

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published May 1, 2018

3′ UTR lengthening as a novel mechanism in regulating cellular senescence

  • Meng Chen
  • Guoliang Lyu
  • Miao Han
  • Hongbo Nie
  • Ting Shen
  • Wei Chen Yichi Niu Yifan Song Xueping Li Huan Li Xinyu Chen Ziyue Wang Zheng Xia Wei Li Xiao-Li Tian Chen Ding Jun Gu Yufang Zheng Xinhua Liu
  • ... [+14 authors] ...,
  • Jinfeng Hu
  • Gang Wei
  • Wei Tao
  • Ting Ni
  • First Published February 12, 2018

A genome-wide interactome of DNA-associated proteins in the human liver

  • Ryne C. Ramaker
  • Daniel Savic
  • Andrew A. Hardigan
  • Kimberly Newberry
  • Gregory M. Cooper
  • Richard M. Myers
  • Sara J. Cooper
  • First Published October 11, 2017
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