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In memoriam

Jim Watson (1928–2025): a genomics visionary

Aravinda Chakravarti
Evan E. Eichler
Anne C. Ferguson-Smith
Richard A. Gibbs
Eric D. Green
John R. Inglis
Kateryna D. Makova
Richard M. Myers
Hillary E. Sussman

First Published July 23, 2026

Method

Multisource omic alignment and biological feature discovery with Performer encoder and triplet networks

Zihuan Du
Xiaoyu Zhang
Qiang Zhang
Jing Li
Zhijie Cao
Ge Gao
Tao Lin
Dong Wang
Shuai Gao

First Published July 22, 2026

Research

LTR7-PLAAT4 as a potential oncogene and therapeutic target in pancreatic adenocarcinoma" > Transcriptomic landscape of transposable elements reveals LTR7-PLAAT4 as a potential oncogene and therapeutic target in pancreatic adenocarcinoma

Meilong Shi
Chuanqi Teng
Shan Zhang
Xiaobo He
Lingyun Xu
Fengxian Han Rongqi Wen Ganjun Yu Jingwen Liu Yang Feng
... [+5 authors] ...,
Yanfeng Wu
Yan Ren
Gang Jin
Jing Li

First Published January 8, 2026

Resource

Haplotype-resolved 3D chromatin architecture of the hybrid pig

Yu Lin
Jing Li
Yiren Gu
Long Jin
Jingyi Bai
Jiaman Zhang Yujie Wang Pengliang Liu Keren Long Mengnan He Diyan Li Can Liu Ziyin Han Yu Zhang Xiaokai Li Bo Zeng Lu Lu Fanli Kong Ying Sun Yongliang Fan Xun Wang Tao Wang An'an Jiang Jideng Ma Linyuan Shen Li Zhu Yanzhi Jiang Guoqing Tang Xiaolan Fan Qingyou Liu Hua Li Jinyong Wang Li Chen
... [+28 authors] ...,
Liangpeng Ge
Xuewei Li
Qianzi Tang
Mingzhou Li

First Published March 13, 2024

Method

Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data

Kaixuan Luo
Jianling Zhong
Alexias Safi
Linda K. Hong
Alok K. Tewari
Lingyun Song
... [+1 authors] ...,
Timothy E. Reddy
Li Ma
Gregory E. Crawford
Alexander J. Hartemink

First Published May 24, 2022

In memoriam

C. Thomas Caskey (1938–2022)

Richard A. Gibbs
Aravinda Chakravarti
Evan E. Eichler
Eric D. Green
Richard M. Myers
Anne C. Ferguson-Smith
Kateryna D. Makova
Hillary E. Sussman

First Published February 17, 2022

In memoriam

Deborah A. Nickerson (1954 –2021)

Aravinda Chakravarti
Evan E. Eichler
Richard A. Gibbs
Eric D. Green
Richard M. Myers
Hillary E. Sussman

First Published January 24, 2022

Resource

A new emu genome illuminates the evolution of genome configuration and nuclear architecture of avian chromosomes

Jing Liu
Zongji Wang
Jing Li
Luohao Xu
Jiaqi Liu
Shaohong Feng Chunxue Guo Shengchan Chen Zhanjun Ren Jinpeng Rao Kai Wei
... [+6 authors] ...,
Yuezhou Chen
Erich D. Jarvis
Guojie Zhang
Qi Zhou

First Published January 6, 2021

Research

Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages" > Sequence analysis in Bos taurus reveals pervasiveness of X–Y arms races in mammalian lineages

Jennifer F. Hughes
Helen Skaletsky
Tatyana Pyntikova
Natalia Koutseva
Terje Raudsepp
Laura G. Brown Daniel W. Bellott Ting-Jan Cho Shannon Dugan-Rocha Ziad Khan Colin Kremitzki Catrina Fronick Tina A. Graves-Lindsay Lucinda Fulton Wesley C. Warren Richard K. Wilson Elaine Owens James E. Womack William J. Murphy Donna M. Muzny
... [+15 authors] ...,
Kim C. Worley
Bhanu P. Chowdhary
Richard A. Gibbs
David C. Page

First Published November 18, 2020

Method

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

Dongwon Lee
Ashish Kapoor
Alexias Safi
Lingyun Song
Marc K. Halushka
Gregory E. Crawford
Aravinda Chakravarti

First Published August 23, 2018

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