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Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data

  • Kaixuan Luo
  • Jianling Zhong
  • Alexias Safi
  • Linda K. Hong
  • Alok K. Tewari
  • Lingyun Song
  • ... [+1 authors] ...,
  • Timothy E. Reddy
  • Li Ma
  • Gregory E. Crawford
  • Alexander J. Hartemink
  • First Published May 24, 2022

cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants" > Human cardiac cis-regulatory elements, their cognate transcription factors, and regulatory DNA sequence variants

  • Dongwon Lee
  • Ashish Kapoor
  • Alexias Safi
  • Lingyun Song
  • Marc K. Halushka
  • Gregory E. Crawford
  • Aravinda Chakravarti
  • First Published August 23, 2018

Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding

  • Ian C. McDowell
  • Alejandro Barrera
  • Anthony M. D'Ippolito
  • Christopher M. Vockley
  • Linda K. Hong
  • Sarah M. Leichter Luke C. Bartelt William H. Majoros Lingyun Song Alexias Safi D. Dewran Koçak Charles A. Gersbach
  • ... [+7 authors] ...,
  • Alexander J. Hartemink
  • Gregory E. Crawford
  • Barbara E. Engelhardt
  • Timothy E. Reddy
  • First Published August 10, 2018

Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

  • Juan L. Mateo
  • Debbie L.C. van den Berg
  • Maximilian Haeussler
  • Daniela Drechsel
  • Zachary B. Gaber
  • Diogo S. Castro Paul Robson Q. Richard Lu Gregory E. Crawford Paul Flicek
  • ... [+5 authors] ...,
  • Laurence Ettwiller
  • Joachim Wittbrodt
  • François Guillemot
  • Ben Martynoga
  • First Published December 1, 2017

Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha

  • James M. Davison
  • Colin R. Lickwar
  • Lingyun Song
  • Ghislain Breton
  • Gregory E. Crawford
  • John F. Rawls
  • First Published April 6, 2017

Corrigendum: Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewal

  • Juan L. Mateo
  • Debbie L.C. van den Berg
  • Maximilian Haeussler
  • Daniela Drechsel
  • Zachary B. Gaber
  • Diogo S. Castro Paul Robson Q. Richard Lu Gregory E. Crawford Paul Flicek
  • ... [+5 authors] ...,
  • Laurence Ettwiller
  • Joachim Wittbrodt
  • François Guillemot
  • Ben Martynoga
  • First Published November 1, 2016

Mapping nucleosome positions using DNase-seq

  • Jianling Zhong
  • Kaixuan Luo
  • Peter S. Winter
  • Gregory E. Crawford
  • Edwin S. Iversen
  • Alexander J. Hartemink
  • First Published January 15, 2016

Chlorocebus aethiops sabaeus)" > The genome of the vervet (Chlorocebus aethiops sabaeus)

  • Wesley C. Warren
  • Anna J. Jasinska
  • Raquel García-Pérez
  • Hannes Svardal
  • Chad Tomlinson
  • Mariano Rocchi Nicoletta Archidiacono Oronzo Capozzi Patrick Minx Michael J. Montague Kim Kyung LaDeana W. Hillier Milinn Kremitzki Tina Graves Colby Chiang Jennifer Hughes Nam Tran Yu Huang Vasily Ramensky Oi-wa Choi Yoon J. Jung Christopher A. Schmitt Nikoleta Juretic Jessica Wasserscheid Trudy R. Turner Roger W. Wiseman Jennifer J. Tuscher Julie A. Karl Jörn E. Schmitz Roland Zahn David H. O'Connor Eugene Redmond Alex Nisbett Béatrice Jacquelin Michaela C. Müller-Trutwin Jason M. Brenchley Michel Dione Martin Antonio Gary P. Schroth Jay R. Kaplan Matthew J. Jorgensen Gregg W.C. Thomas Matthew W. Hahn Brian J. Raney Bronwen Aken Rishi Nag Juergen Schmitz Gennady Churakov Angela Noll Roscoe Stanyon David Webb Francoise Thibaud-Nissen Magnus Nordborg Tomas Marques-Bonet
  • ... [+49 authors] ...,
  • Ken Dewar
  • George M. Weinstock
  • Richard K. Wilson
  • Nelson B. Freimer
  • First Published September 16, 2015

Genome-wide specificity of DNA binding, gene regulation, and chromatin remodeling by TALE- and CRISPR/Cas9-based transcriptional activators

  • Lauren R. Polstein
  • Pablo Perez-Pinera
  • D. Dewran Kocak
  • Christopher M. Vockley
  • Peggy Bledsoe
  • Lingyun Song
  • ... [+1 authors] ...,
  • Alexias Safi
  • Gregory E. Crawford
  • Timothy E. Reddy
  • Charles A. Gersbach
  • First Published May 29, 2015

Genome accessibility is widely preserved and locally modulated during mitosis

  • Chris C.-S. Hsiung
  • Christapher S. Morrissey
  • Maheshi Udugama
  • Christopher L. Frank
  • Cheryl A. Keller
  • Songjoon Baek Belinda Giardine
  • ... [+2 authors] ...,
  • Gregory E. Crawford
  • Myong-Hee Sung
  • Ross C. Hardison
  • Gerd A. Blobel
  • First Published November 4, 2014
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