Research
Closing the gaps, and improving somatic structural variant analysis and benchmarking using CHM13-T2T
- First Published March 17, 2025
Research
Rearrangements of viral and human genomes at human papillomavirus integration events and their allele-specific impacts on cancer genome regulation
- First Published December 5, 2024
Method
Seamless, rapid, and accurate analyses of outbreak genomic data using split k-mer analysis
- First Published October 15, 2024
Method
Ancestry-agnostic estimation of DNA sample contamination from sequence reads
- First Published January 24, 2020
Method
Fast and flexible bacterial genomic epidemiology with PopPUNK
- First Published January 24, 2019
Research
Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion
- First Published June 6, 2017
Research
Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently
- First Published September 23, 2016
Research
Genome specialization and decay of the strangles pathogen, Streptococcus equi, is driven by persistent infection
- First Published July 9, 2015
Method
An efficient and scalable analysis framework for variant extraction and refinement from population-scale DNA sequence data
- First Published April 16, 2015