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Research

Characterizing intra- and intertumor heterogeneity in ovarian high-grade serous carcinoma subtypes using single-cell and spatial transcriptomics

  • Weishan Li
  • Laurie Grieshober
  • Jason Gertz
  • Adriana Ivich
  • Jennifer A. Doherty
  • Casey S. Greene
  • Stephanie C. Hicks
  • First Published August 17, 2026
Research

Identification of genomic features that uniquely impact estrogen receptor alpha binding and its effects on gene expression in endometrial cancer

  • Alexandra Richey
  • Noel Kitchen
  • Craig M. Rush
  • Jeffery M. Vahrenkamp
  • Hosiana Abewe
  • Kyle S. Osbourne
  • ... [+1 authors] ...,
  • Alex J. Bott
  • Brian K. Dalley
  • Jared Rutter
  • Jason Gertz
  • First Published July 17, 2026
Research

Estrogen-induced chromatin looping changes identify a subset of functional regulatory elements

  • Hosiana Abewe
  • Alexandra Richey
  • Jeffery M. Vahrenkamp
  • Matthew Ginley-Hidinger
  • Craig M. Rush
  • Noel Kitchen
  • Xiaoyang Zhang
  • Jason Gertz
  • First Published March 3, 2025
Resource

Binding profiles for 961 Drosophila and C. elegans transcription factors reveal tissue-specific regulatory relationships

  • Michelle Kudron
  • Louis Gevirtzman
  • Alec Victorsen
  • Bridget C. Lear
  • Jiahao Gao
  • Jinrui Xu Swapna Samanta Emily Frink Adri Tran-Pearson Chau Huynh Dionne Vafeados Ann Hammonds William Fisher Martha Wall Greg Wesseling Vanessa Hernandez Zhichun Lin Mary Kasparian Kevin White Ravi Allada Mark Gerstein
  • ... [+16 authors] ...,
  • LaDeana Hillier
  • Susan E. Celniker
  • Valerie Reinke
  • Robert H. Waterston
  • First Published October 22, 2024
Resource

Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

  • Timothy J. Durham
  • Riza M. Daza
  • Louis Gevirtzman
  • Darren A. Cusanovich
  • Olubusayo Bolonduro
  • William Stafford Noble
  • Jay Shendure
  • Robert H. Waterston
  • First Published April 22, 2021
Method

Ancestry-agnostic estimation of DNA sample contamination from sequence reads

  • Fan Zhang
  • Matthew Flickinger
  • Sarah A. Gagliano Taliun
  • Gonçalo R. Abecasis
  • Laura J. Scott
  • Steven A. McCaroll
  • Carlos N. Pato
  • Michael Boehnke
  • Hyun Min Kang
  • First Published January 24, 2020
Method

FFPEcap-seq: a method for sequencing capped RNAs in formalin-fixed paraffin-embedded samples

  • Jeffery M. Vahrenkamp
  • Kathryn Szczotka
  • Mark K. Dodson
  • Elke A. Jarboe
  • Andrew P. Soisson
  • Jason Gertz
  • First Published October 24, 2019
Research

Estrogen-independent molecular actions of mutant estrogen receptor 1 in endometrial cancer

  • Zannel Blanchard
  • Jeffery M. Vahrenkamp
  • Kristofer C. Berrett
  • Spencer Arnesen
  • Jason Gertz
  • First Published July 30, 2019
Resource

The C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution

  • Adam D. Warner
  • Louis Gevirtzman
  • LaDeana W. Hillier
  • Brent Ewing
  • Robert H. Waterston
  • First Published May 23, 2019
In memoriam

John Sulston (1942–2018)

  • Robert H. Waterston
  • First Published June 1, 2018
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