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Research

Discovery of non-ETS gene fusions in human prostate cancer using next-generation RNA sequencing

Dorothee Pflueger
Stéphane Terry
Andrea Sboner
Lukas Habegger
Raquel Esgueva
Pei-Chun Lin Maria A. Svensson Naoki Kitabayashi Benjamin J. Moss Theresa Y. MacDonald Xuhong Cao Terrence Barrette Ashutosh K. Tewari Mark S. Chee Arul M. Chinnaiyan
... [+10 authors] ...,
David S. Rickman
Francesca Demichelis
Mark B. Gerstein
Mark A. Rubin

First Published October 29, 2010

Resource

A SNP discovery method to assess variant allele probability from next-generation resequencing data

Yufeng Shen
Zhengzheng Wan
Cristian Coarfa
Rafal Drabek
Lei Chen
Elizabeth A. Ostrowski Yue Liu
... [+2 authors] ...,
George M. Weinstock
David A. Wheeler
Richard A. Gibbs
Fuli Yu

First Published December 17, 2009

Methods

Microarray-based multicycle-enrichment of genomic subsets for targeted next-generation sequencing

Daniel Summerer
Haiguo Wu
Bettina Haase
Yang Cheng
Nadine Schracke
Cord F. Stähler
Mark S. Chee
Peer F. Stähler
Markus Beier

First Published July 28, 2009

RESOURCE

28-Way vertebrate alignment and conservation track in the UCSC Genome Browser

Webb Miller
Kate Rosenbloom
Ross C. Hardison
Minmei Hou
James Taylor
Brian Raney Richard Burhans David C. King Robert Baertsch Daniel Blankenberg Sergei L. Kosakovsky Pond Anton Nekrutenko Belinda Giardine Robert S. Harris Svitlana Tyekucheva Mark Diekhans Thomas H. Pringle William J. Murphy Arthur Lesk George M. Weinstock Kerstin Lindblad-Toh Richard A. Gibbs
... [+17 authors] ...,
Eric S. Lander
Adam Siepel
David Haussler
W. James Kent

First Published November 5, 2007

ARTICLE

Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome

Elliott H. Margulies
Gregory M. Cooper
George Asimenos
Daryl J. Thomas
Colin N. Dewey
Adam Siepel Ewan Birney Damian Keefe Ariel S. Schwartz Minmei Hou James Taylor Sergey Nikolaev Juan I. Montoya-Burgos Ari Löytynoja Simon Whelan Fabio Pardi Tim Massingham James B. Brown Peter Bickel Ian Holmes James C. Mullikin Abel Ureta-Vidal Benedict Paten Eric A. Stone Kate R. Rosenbloom W. James Kent Gerard G. Bouffard Xiaobin Guan Nancy F. Hansen Jacquelyn R. Idol Valerie V.B. Maduro Baishali Maskeri Jennifer C. McDowell Morgan Park Pamela J. Thomas Alice C. Young Robert W. Blakesley Donna M. Muzny Erica Sodergren David A. Wheeler Kim C. Worley Huaiyang Jiang George M. Weinstock Richard A. Gibbs Tina Graves Robert Fulton Elaine R. Mardis Richard K. Wilson Michele Clamp James Cuff Sante Gnerre David B. Jaffe Jean L. Chang Kerstin Lindblad-Toh Eric S. Lander Angie Hinrichs Heather Trumbower Hiram Clawson Ann Zweig Robert M. Kuhn Galt Barber Rachel Harte Donna Karolchik Matthew A. Field Richard A. Moore Carrie A. Matthewson Jacqueline E. Schein Marco A. Marra Stylianos E. Antonarakis Serafim Batzoglou Nick Goldman Ross Hardison David Haussler
... [+68 authors] ...,
Webb Miller
Lior Pachter
Eric D. Green
Arend Sidow

First Published June 13, 2007

COMMENTARY

ENCODE: More genomic empowerment

George M. Weinstock

First Published June 13, 2007

COMMENTARY

Community annotation: Procedures, protocols, and supporting tools

Christine G. Elsik
Kim C. Worley
Lan Zhang
Natalia V. Milshina
Huaiyang Jiang
Justin T. Reese Kevin L. Childs
... [+2 authors] ...,
Anand Venkatraman
C. Michael Dickens
George M. Weinstock
Richard A. Gibbs

First Published October 25, 2006

LETTER

Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects

Joël Savard
Diethard Tautz
Stephen Richards
George M. Weinstock
Richard A. Gibbs
John H. Werren
Hervé Tettelin
Martin J. Lercher

First Published October 25, 2006

Methods

High-throughput DNA methylation profiling using universal bead arrays

Marina Bibikova
Zhenwu Lin
Lixin Zhou
Eugene Chudin
Eliza Wickham Garcia
Bonnie Wu Dennis Doucet Neal J. Thomas Yunhua Wang Ekkehard Vollmer Torsten Goldmann Carola Seifart Wei Jiang
... [+8 authors] ...,
David L. Barker
Mark S. Chee
Joanna Floros
Jian-Bing Fan

First Published January 31, 2006

ARTICLE

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

Adam Siepel
Gill Bejerano
Jakob S. Pedersen
Angie S. Hinrichs
Minmei Hou
Kate Rosenbloom Hiram Clawson John Spieth LaDeana W. Hillier Stephen Richards George M. Weinstock Richard K. Wilson
... [+7 authors] ...,
Richard A. Gibbs
W. James Kent
Webb Miller
David Haussler

First Published July 15, 2005

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