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Resource

Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history

  • Yang Zhou
  • Lv Yang
  • Xiaotao Han
  • Jiazheng Han
  • Yan Hu
  • Fan Li Han Xia Lingwei Peng Clarissa Boschiero Benjamin D. Rosen Derek M. Bickhart Shujun Zhang Aizhen Guo
  • ... [+8 authors] ...,
  • Curtis P. Van Tassell
  • Timothy P.L. Smith
  • Liguo Yang
  • George E. Liu
  • First Published August 17, 2022
Resource

Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle

  • Lingzhao Fang
  • Wentao Cai
  • Shuli Liu
  • Oriol Canela-Xandri
  • Yahui Gao
  • Jicai Jiang Konrad Rawlik Bingjie Li Steven G. Schroeder Benjamin D. Rosen Cong-jun Li Tad S. Sonstegard Leeson J. Alexander Curtis P. Van Tassell Paul M. VanRaden John B. Cole Ying Yu
  • ... [+12 authors] ...,
  • Shengli Zhang
  • Albert Tenesa
  • Li Ma
  • George E. Liu
  • First Published May 18, 2020
Resource

Copy number variation of individual cattle genomes using next-generation sequencing

  • Derek M. Bickhart
  • Yali Hou
  • Steven G. Schroeder
  • Can Alkan
  • Maria Francesca Cardone
  • Lakshmi K. Matukumalli Jiuzhou Song Robert D. Schnabel Mario Ventura Jeremy F. Taylor Jose Fernando Garcia
  • ... [+6 authors] ...,
  • Curtis P. Van Tassell
  • Tad S. Sonstegard
  • Evan E. Eichler
  • George E. Liu
  • First Published February 2, 2012
Research

Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration

  • Weisheng Wu
  • Yong Cheng
  • Cheryl A. Keller
  • Jason Ernst
  • Swathi Ashok Kumar
  • Tejaswini Mishra Christapher Morrissey Christine M. Dorman Kuan-Bei Chen Daniela Drautz Belinda Giardine Yoichiro Shibata Lingyun Song Max Pimkin Gregory E. Crawford Terrence S. Furey Manolis Kellis Webb Miller James Taylor Stephan C. Schuster Yu Zhang
  • ... [+16 authors] ...,
  • Francesca Chiaromonte
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published July 27, 2011
Method

Genome-wide identification of conserved regulatory function in diverged sequences

  • Leila Taher
  • David M. McGaughey
  • Samantha Maragh
  • Ivy Aneas
  • Seneca L. Bessling
  • Webb Miller
  • Marcelo A. Nobrega
  • Andrew S. McCallion
  • Ivan Ovcharenko
  • First Published May 31, 2011
Resource

Analysis of copy number variations among diverse cattle breeds

  • George E. Liu
  • Yali Hou
  • Bin Zhu
  • Maria Francesca Cardone
  • Lu Jiang
  • Angelo Cellamare Apratim Mitra Leeson J. Alexander Luiz L. Coutinho Maria Elena Dell'Aquila Lou C. Gasbarre Gianni Lacalandra Robert W. Li Lakshmi K. Matukumalli Dan Nonneman Luciana C. de A. Regitano Tim P.L. Smith Jiuzhou Song Tad S. Sonstegard Curt P. Van Tassell
  • ... [+15 authors] ...,
  • Mario Ventura
  • Evan E. Eichler
  • Tara G. McDaneld
  • John W. Keele
  • First Published March 8, 2010
Article

Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression

  • Yong Cheng
  • Weisheng Wu
  • Swathi Ashok Kumar
  • Duonan Yu
  • Wulan Deng
  • Tamara Tripic David C. King Kuan-Bei Chen Ying Zhang Daniela Drautz Belinda Giardine Stephan C. Schuster Webb Miller Francesca Chiaromonte
  • ... [+9 authors] ...,
  • Yu Zhang
  • Gerd A. Blobel
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published November 3, 2009
Letter

Alu repeats in primate genomes" > Comparative analysis of Alu repeats in primate genomes

  • George E. Liu
  • Can Alkan
  • Lu Jiang
  • Shaying Zhao
  • Evan E. Eichler
  • First Published May 1, 2009
LETTER

Thylacinus cynocephalus)" > The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)

  • Webb Miller
  • Daniela I. Drautz
  • Jan E. Janecka
  • Arthur M. Lesk
  • Aakrosh Ratan
  • Lynn P. Tomsho Mike Packard Yeting Zhang Lindsay R. McClellan Ji Qi Fangqing Zhao M. Thomas P. Gilbert Love Dalén Juan Luis Arsuaga Per G.P. Ericson Daniel H. Huson
  • ... [+11 authors] ...,
  • Kristofer M. Helgen
  • William J. Murphy
  • Anders Götherström
  • Stephan C. Schuster
  • First Published January 12, 2009
LETTER

Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif

  • Yong Cheng
  • David C. King
  • Louis C. Dore
  • Xinmin Zhang
  • Yuepin Zhou
  • Ying Zhang Christine Dorman Demesew Abebe Swathi A. Kumar Francesca Chiaromonte
  • ... [+5 authors] ...,
  • Webb Miller
  • Roland D. Green
  • Mitchell J. Weiss
  • Ross C. Hardison
  • First Published September 25, 2008
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