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Resource

Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history

Yang Zhou
Lv Yang
Xiaotao Han
Jiazheng Han
Yan Hu
Fan Li Han Xia Lingwei Peng Clarissa Boschiero Benjamin D. Rosen Derek M. Bickhart Shujun Zhang Aizhen Guo
... [+8 authors] ...,
Curtis P. Van Tassell
Timothy P.L. Smith
Liguo Yang
George E. Liu

First Published August 17, 2022

Research

The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible

Yue Hao
Makenzie E. Mabry
Patrick P. Edger
Michael Freeling
Chunfang Zheng
Lingling Jin Robert VanBuren Marivi Colle Hong An R. Shawn Abrahams Jacob D. Washburn Xinshuai Qi Kerrie Barry Christopher Daum Shengqiang Shu Jeremy Schmutz David Sankoff
... [+12 authors] ...,
Michael S. Barker
Eric Lyons
J. Chris Pires
Gavin C. Conant

First Published April 16, 2021

Resource

Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle

Lingzhao Fang
Wentao Cai
Shuli Liu
Oriol Canela-Xandri
Yahui Gao
Jicai Jiang Konrad Rawlik Bingjie Li Steven G. Schroeder Benjamin D. Rosen Cong-jun Li Tad S. Sonstegard Leeson J. Alexander Curtis P. Van Tassell Paul M. VanRaden John B. Cole Ying Yu
... [+12 authors] ...,
Shengli Zhang
Albert Tenesa
Li Ma
George E. Liu

First Published May 18, 2020

Resource

Copy number variation of individual cattle genomes using next-generation sequencing

Derek M. Bickhart
Yali Hou
Steven G. Schroeder
Can Alkan
Maria Francesca Cardone
Lakshmi K. Matukumalli Jiuzhou Song Robert D. Schnabel Mario Ventura Jeremy F. Taylor Jose Fernando Garcia
... [+6 authors] ...,
Curtis P. Van Tassell
Tad S. Sonstegard
Evan E. Eichler
George E. Liu

First Published February 2, 2012

Resource

High-resolution mapping of open chromatin in the rice genome

Wenli Zhang
Yufeng Wu
James C. Schnable
Zixian Zeng
Michael Freeling
Gregory E. Crawford
Jiming Jiang

First Published November 22, 2011

Resource

Analysis of copy number variations among diverse cattle breeds

George E. Liu
Yali Hou
Bin Zhu
Maria Francesca Cardone
Lu Jiang
Angelo Cellamare Apratim Mitra Leeson J. Alexander Luiz L. Coutinho Maria Elena Dell'Aquila Lou C. Gasbarre Gianni Lacalandra Robert W. Li Lakshmi K. Matukumalli Dan Nonneman Luciana C. de A. Regitano Tim P.L. Smith Jiuzhou Song Tad S. Sonstegard Curt P. Van Tassell
... [+15 authors] ...,
Mario Ventura
Evan E. Eichler
Tara G. McDaneld
John W. Keele

First Published March 8, 2010

Letter

Alu repeats in primate genomes" > Comparative analysis of Alu repeats in primate genomes

George E. Liu
Can Alkan
Lu Jiang
Shaying Zhao
Evan E. Eichler

First Published May 1, 2009

LETTER

Arabidopsis transposed after the origin of the order Brassicales" > Many or most genes in Arabidopsis transposed after the origin of the order Brassicales

Michael Freeling
Eric Lyons
Brent Pedersen
Maqsudul Alam
Ray Ming
Damon Lisch

First Published October 3, 2008

PERSPECTIVE

Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity

Michael Freeling
Brian C. Thomas

First Published July 3, 2006

LETTER

Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes" > Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes

Brian C. Thomas
Brent Pedersen
Michael Freeling

First Published June 7, 2006

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