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Assembly of a pangenome for global cattle reveals missing sequences and novel structural variations, providing new insights into their diversity and evolutionary history

  • Yang Zhou
  • Lv Yang
  • Xiaotao Han
  • Jiazheng Han
  • Yan Hu
  • Fan Li Han Xia Lingwei Peng Clarissa Boschiero Benjamin D. Rosen Derek M. Bickhart Shujun Zhang Aizhen Guo
  • ... [+8 authors] ...,
  • Curtis P. Van Tassell
  • Timothy P.L. Smith
  • Liguo Yang
  • George E. Liu
  • First Published August 17, 2022
Resource

Comprehensive analyses of 723 transcriptomes enhance genetic and biological interpretations for complex traits in cattle

  • Lingzhao Fang
  • Wentao Cai
  • Shuli Liu
  • Oriol Canela-Xandri
  • Yahui Gao
  • Jicai Jiang Konrad Rawlik Bingjie Li Steven G. Schroeder Benjamin D. Rosen Cong-jun Li Tad S. Sonstegard Leeson J. Alexander Curtis P. Van Tassell Paul M. VanRaden John B. Cole Ying Yu
  • ... [+12 authors] ...,
  • Shengli Zhang
  • Albert Tenesa
  • Li Ma
  • George E. Liu
  • First Published May 18, 2020
Resource

Copy number variation of individual cattle genomes using next-generation sequencing

  • Derek M. Bickhart
  • Yali Hou
  • Steven G. Schroeder
  • Can Alkan
  • Maria Francesca Cardone
  • Lakshmi K. Matukumalli Jiuzhou Song Robert D. Schnabel Mario Ventura Jeremy F. Taylor Jose Fernando Garcia
  • ... [+6 authors] ...,
  • Curtis P. Van Tassell
  • Tad S. Sonstegard
  • Evan E. Eichler
  • George E. Liu
  • First Published February 2, 2012
Resource

Assemblathon 1: A competitive assessment of de novo short read assembly methods

  • Dent Earl
  • Keith Bradnam
  • John St. John
  • Aaron Darling
  • Dawei Lin
  • Joseph Fass Hung On Ken Yu Vince Buffalo Daniel R. Zerbino Mark Diekhans Ngan Nguyen Pramila Nuwantha Ariyaratne Wing-Kin Sung Zemin Ning Matthias Haimel Jared T. Simpson Nuno A. Fonseca İnanç Birol T. Roderick Docking Isaac Y. Ho Daniel S. Rokhsar Rayan Chikhi Dominique Lavenier Guillaume Chapuis Delphine Naquin Nicolas Maillet Michael C. Schatz David R. Kelley Adam M. Phillippy Sergey Koren Shiaw-Pyng Yang Wei Wu Wen-Chi Chou Anuj Srivastava Timothy I. Shaw J. Graham Ruby Peter Skewes-Cox Miguel Betegon Michelle T. Dimon Victor Solovyev Igor Seledtsov Petr Kosarev Denis Vorobyev Ricardo Ramirez-Gonzalez Richard Leggett Dan MacLean Fangfang Xia Ruibang Luo Zhenyu Li Yinlong Xie Binghang Liu Sante Gnerre Iain MacCallum Dariusz Przybylski Filipe J. Ribeiro Shuangye Yin Ted Sharpe Giles Hall Paul J. Kersey Richard Durbin Shaun D. Jackman Jarrod A. Chapman Xiaoqiu Huang Joseph L. DeRisi Mario Caccamo Yingrui Li David B. Jaffe
  • ... [+62 authors] ...,
  • Richard E. Green
  • David Haussler
  • Ian Korf
  • Benedict Paten
  • First Published September 16, 2011
Resource

Analysis of copy number variations among diverse cattle breeds

  • George E. Liu
  • Yali Hou
  • Bin Zhu
  • Maria Francesca Cardone
  • Lu Jiang
  • Angelo Cellamare Apratim Mitra Leeson J. Alexander Luiz L. Coutinho Maria Elena Dell'Aquila Lou C. Gasbarre Gianni Lacalandra Robert W. Li Lakshmi K. Matukumalli Dan Nonneman Luciana C. de A. Regitano Tim P.L. Smith Jiuzhou Song Tad S. Sonstegard Curt P. Van Tassell
  • ... [+15 authors] ...,
  • Mario Ventura
  • Evan E. Eichler
  • Tara G. McDaneld
  • John W. Keele
  • First Published March 8, 2010
Letter

Alu repeats in primate genomes" > Comparative analysis of Alu repeats in primate genomes

  • George E. Liu
  • Can Alkan
  • Lu Jiang
  • Shaying Zhao
  • Evan E. Eichler
  • First Published May 1, 2009
12 | Genomes/Letter

Drosophila microRNAs" > Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs

  • J. Graham Ruby
  • Alexander Stark
  • Wendy K. Johnston
  • Manolis Kellis
  • David P. Bartel
  • Eric C. Lai
  • First Published November 7, 2007
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