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Multicondition and multimodal temporal profile inference during mouse embryonic development

Ran Zhang
Chengxiang Qiu
Galina N. Filippova
Gang Li
Jay Shendure
Jean-Philippe Vert
Xinxian Deng
William Stafford Noble
Christine M. Disteche

First Published August 14, 2025

GenomeMUSter mouse genetic variation service enables multitrait, multipopulation data integration and analysis

Robyn L. Ball
Molly A. Bogue
Hongping Liang
Anuj Srivastava
David G. Ashbrook
Anna Lamoureux Matthew W. Gerring Alexander S. Hatoum Matthew J. Kim Hao He Jake Emerson Alexander K. Berger David O. Walton Keith Sheppard Baha El Kassaby Francisco Castellanos Govindarajan Kunde-Ramamoorthy Lu Lu John Bluis Sejal Desai Beth A. Sundberg Gary Peltz Zhuoqing Fang Gary A. Churchill Robert W. Williams
... [+20 authors] ...,
Arpana Agrawal
Carol J. Bult
Vivek M. Philip
Elissa J. Chesler

First Published January 30, 2024

Variation in histone configurations correlates with gene expression across nine inbred strains of mice

Anna L. Tyler
Catrina Spruce
Romy Kursawe
Annat Haber
Robyn L. Ball
Wendy A. Pitman Alexander D. Fine Narayanan Raghupathy Michael Walker Vivek M. Philip Christopher L. Baker J. Matthew Mahoney Gary A. Churchill Jennifer J. Trowbridge
... [+9 authors] ...,
Michael L. Stitzel
Kenneth Paigen
Petko M. Petkov
Gregory W. Carter

First Published May 22, 2023

Genome-wide transcript and protein analysis highlights the role of protein homeostasis in the aging mouse heart

Isabela Gerdes Gyuricza
Joel M. Chick
Gregory R. Keele
Andrew G. Deighan
Steven C. Munger
Ron Korstanje
Steven P. Gygi
Gary A. Churchill

First Published March 11, 2022

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

Timothy J. Durham
Riza M. Daza
Louis Gevirtzman
Darren A. Cusanovich
Olubusayo Bolonduro
William Stafford Noble
Jay Shendure
Robert H. Waterston

First Published April 22, 2021

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

Brian S. Roberts
E. Christopher Partridge
Bryan A. Moyers
Vikram Agarwal
Kimberly M. Newberry
Beth K. Martin
Jay Shendure
Richard M. Myers
Gregory M. Cooper

First Published April 20, 2021

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

Adebola Enikanolaiye
Julie Ruston
Rong Zeng
Christine Taylor
Marijke Schrock
Christie M. Buchovecky
Jay Shendure
Elif Acar
Monica J. Justice

First Published April 21, 2020

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

Fumitaka Inoue
Martin Kircher
Beth Martin
Gregory M. Cooper
Daniela M. Witten
Michael T. McManus
Nadav Ahituv
Jay Shendure

First Published May 1, 2018

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

Fumitaka Inoue
Martin Kircher
Beth Martin
Gregory M. Cooper
Daniela M. Witten
Michael T. McManus
Nadav Ahituv
Jay Shendure

First Published November 9, 2016

Corrigendum: MIPSTR: a method for multiplex genotyping of germline and somatic STR variation across many individuals

Keisha D. Carlson
Peter H. Sudmant
Maximilian O. Press
Evan E. Eichler
Jay Shendure
Christine Queitsch

First Published August 3, 2015

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