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A limited set of transcriptional programs define major cell types

Alessandra Breschi
Manuel Muñoz-Aguirre
Valentin Wucher
Carrie A. Davis
Diego Garrido-Martín
Sarah Djebali Jesse Gillis Dmitri D. Pervouchine Anna Vlasova Alexander Dobin Chris Zaleski Jorg Drenkow Cassidy Danyko Alexandra Scavelli
... [+9 authors] ...,
Ferran Reverter
Michael P. Snyder
Thomas R. Gingeras
Roderic Guigó

First Published July 29, 2020

Dynamics of microRNA expression during mouse prenatal development

Sorena Rahmanian
Rabi Murad
Alessandra Breschi
Weihua Zeng
Mark Mackiewicz
Brian Williams Carrie A. Davis Brian Roberts Sarah Meadows Dianna Moore Diane Trout Chris Zaleski Alex Dobin Lei-Hoon Sei Jorg Drenkow Alex Scavelli Thomas R. Gingeras
... [+12 authors] ...,
Barbara J. Wold
Richard M. Myers
Roderic Guigó
Ali Mortazavi

First Published October 23, 2019

Alu elements suggests cell-type–specific enhancer function" > Genome-wide analysis of polymerase III–transcribed Alu elements suggests cell-type–specific enhancer function

Xiao-Ou Zhang
Thomas R. Gingeras
Zhiping Weng

First Published August 14, 2019

Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment" > Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment

Theodore Gouliouris
Kathy E. Raven
Danesh Moradigaravand
Catherine Ludden
Francesc Coll
Beth Blane Plamena Naydenova Carolyne Horner Nicholas M. Brown
... [+4 authors] ...,
Jukka Corander
Direk Limmathurotsakul
Julian Parkhill
Sharon J. Peacock

First Published March 21, 2019

The circular RNome of primary breast cancer

Marcel Smid
Saskia M. Wilting
Katharina Uhr
F. Germán Rodríguez-González
Vanja de Weerd
Wendy J.C. Prager-Van der Smissen Michelle van der Vlugt-Daane Anne van Galen Serena Nik-Zainal Adam Butler Sancha Martin Helen R. Davies Johan Staaf Marc J. van de Vijver Andrea L. Richardson Gaëten MacGrogan Roberto Salgado Gert G.G.M. van den Eynden Colin A. Purdie Alastair M. Thompson Carlos Caldas Paul N. Span Fred C.G.J. Sweep Peter T. Simpson Sunil R. Lakhani Steven Van Laere Christine Desmedt Angelo Paradiso Jorunn Eyfjord Annegien Broeks Anne Vincent-Salomon Andrew P. Futreal Stian Knappskog Tari King Alain Viari Anne-Lise Børresen-Dale Hendrik G. Stunnenberg
... [+32 authors] ...,
Mike Stratton
John A. Foekens
Anieta M. Sieuwerts
John W.M. Martens

First Published January 28, 2019

Corrigendum: Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland

Sandra Reuter
M. Estée Török
Matthew T.G. Holden
Rosy Reynolds
Kathy E. Raven
Beth Blane Tjibbe Donker Stephen D. Bentley David M. Aanensen Hajo Grundmann
... [+5 authors] ...,
Edward J. Feil
Brian G. Spratt
Julian Parkhill
Sharon J. Peacock

First Published September 1, 2017

Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131" > Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131

Teemu Kallonen
Hayley J. Brodrick
Simon R. Harris
Jukka Corander
Nicholas M. Brown
Veronique Martin
Sharon J. Peacock
Julian Parkhill

First Published July 18, 2017

Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion" > Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion

James Hadfield
Simon R. Harris
Helena M.B. Seth-Smith
Surendra Parmar
Patiyan Andersson
Philip M. Giffard Julius Schachter Jeanne Moncada Louise Ellison María Lucía Gallo Vaulet Marcelo Rodríguez Fermepin Frans Radebe Suyapa Mendoza Sander Ouburg Servaas A. Morré Konrad Sachse Mirja Puolakkainen Suvi J. Korhonen Chris Sonnex Rebecca Wiggins Hamid Jalal Tamara Brunelli Patrizia Casprini Rachel Pitt Cathy Ison Alevtina Savicheva Elena Shipitsyna Ronza Hadad Laszlo Kari Matthew J. Burton David Mabey Anthony W. Solomon David Lewis Peter Marsh
... [+29 authors] ...,
Magnus Unemo
Ian N. Clarke
Julian Parkhill
Nicholas R. Thomson

First Published June 6, 2017

Legionella pneumophila have emerged recently and independently" > Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently

Sophia David
Christophe Rusniok
Massimo Mentasti
Laura Gomez-Valero
Simon R. Harris
Pierre Lechat John Lees Christophe Ginevra Philippe Glaser Laurence Ma Christiane Bouchier Anthony Underwood
... [+7 authors] ...,
Sophie Jarraud
Timothy G. Harrison
Julian Parkhill
Carmen Buchrieser

First Published September 23, 2016

Enterococcus faecium in the United Kingdom and Ireland" > A decade of genomic history for healthcare-associated Enterococcus faecium in the United Kingdom and Ireland

Kathy E. Raven
Sandra Reuter
Rosy Reynolds
Hayley J. Brodrick
Julie E. Russell
M. Estée Török
Julian Parkhill
Sharon J. Peacock

First Published August 15, 2016

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