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Your search for returned 26 results

Research

Genetic control of the dynamic transcriptional response to immune stimuli and glucocorticoids at single-cell resolution

Justyna A. Resztak
Julong Wei
Samuele Zilioli
Edward Sendler
Adnan Alazizi
Henriette E. Mair-Meijers Peijun Wu Xiaoquan Wen
... [+3 authors] ...,
Richard B. Slatcher
Xiang Zhou
Francesca Luca
Roger Pique-Regi

First Published July 13, 2023

Method

High-throughput characterization of genetic effects on DNA–protein binding and gene transcription

Cynthia A. Kalita
Christopher D. Brown
Andrew Freiman
Jenna Isherwood
Xiaoquan Wen
Roger Pique-Regi
Francesca Luca

First Published September 25, 2018

Research

High-throughput allele-specific expression across 250 environmental conditions

Gregory A. Moyerbrailean
Allison L. Richards
Daniel Kurtz
Cynthia A. Kalita
Gordon O. Davis
Chris T. Harvey Adnan Alazizi Donovan Watza Yoram Sorokin Nancy Hauff
... [+5 authors] ...,
Xiang Zhou
Xiaoquan Wen
Roger Pique-Regi
Francesca Luca

First Published October 19, 2016

Research

Bacterial infection remodels the DNA methylation landscape of human dendritic cells

Alain Pacis
Ludovic Tailleux
Alexander M. Morin
John Lambourne
Julia L. MacIsaac
Vania Yotova Anne Dumaine Anne Danckaert Francesca Luca Jean-Christophe Grenier Kasper D. Hansen Brigitte Gicquel Miao Yu Athma Pai Chuan He Jenny Tung Tomi Pastinen
... [+12 authors] ...,
Michael S. Kobor
Roger Pique-Regi
Yoav Gilad
Luis B. Barreiro

First Published September 21, 2015

Method

Read clouds uncover variation in complex regions of the human genome

Alex Bishara
Yuling Liu
Ziming Weng
Dorna Kashef-Haghighi
Daniel E. Newburger
Robert West
Arend Sidow
Serafim Batzoglou

First Published August 18, 2015

Method

Parente2: a fast and accurate method for detecting identity by descent

Jesse M. Rodriguez
Sivan Bercovici
Lin Huang
Roy Frostig
Serafim Batzoglou

First Published October 1, 2014

Research

Genome evolution during progression to breast cancer

Daniel E. Newburger
Dorna Kashef-Haghighi
Ziming Weng
Raheleh Salari
Robert T. Sweeney
Alayne L. Brunner Shirley X. Zhu Xiangqian Guo Sushama Varma
... [+4 authors] ...,
Megan L. Troxell
Robert B. West
Serafim Batzoglou
Arend Sidow

First Published April 8, 2013

Method

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

Anshul Kundaje
Sofia Kyriazopoulou-Panagiotopoulou
Max Libbrecht
Cheryl L. Smith
Debasish Raha
Elliott E. Winters
... [+1 authors] ...,
Steven M. Johnson
Michael Snyder
Serafim Batzoglou
Arend Sidow

First Published September 5, 2012

Resource

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Stephen G. Landt
Georgi K. Marinov
Anshul Kundaje
Pouya Kheradpour
Florencia Pauli
Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
... [+38 authors] ...,
Peggy J. Farnham
Jason D. Lieb
Barbara J. Wold
Michael Snyder

First Published September 5, 2012

Method

Linking disease associations with regulatory information in the human genome

Marc A. Schaub
Alan P. Boyle
Anshul Kundaje
Serafim Batzoglou
Michael Snyder

First Published September 5, 2012

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