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Genetic control of the dynamic transcriptional response to immune stimuli and glucocorticoids at single-cell resolution

Justyna A. Resztak
Julong Wei
Samuele Zilioli
Edward Sendler
Adnan Alazizi
Henriette E. Mair-Meijers Peijun Wu Xiaoquan Wen
... [+3 authors] ...,
Richard B. Slatcher
Xiang Zhou
Francesca Luca
Roger Pique-Regi

First Published July 13, 2023

A limited set of transcriptional programs define major cell types

Alessandra Breschi
Manuel Muñoz-Aguirre
Valentin Wucher
Carrie A. Davis
Diego Garrido-Martín
Sarah Djebali Jesse Gillis Dmitri D. Pervouchine Anna Vlasova Alexander Dobin Chris Zaleski Jorg Drenkow Cassidy Danyko Alexandra Scavelli
... [+9 authors] ...,
Ferran Reverter
Michael P. Snyder
Thomas R. Gingeras
Roderic Guigó

First Published July 29, 2020

Dynamics of microRNA expression during mouse prenatal development

Sorena Rahmanian
Rabi Murad
Alessandra Breschi
Weihua Zeng
Mark Mackiewicz
Brian Williams Carrie A. Davis Brian Roberts Sarah Meadows Dianna Moore Diane Trout Chris Zaleski Alex Dobin Lei-Hoon Sei Jorg Drenkow Alex Scavelli Thomas R. Gingeras
... [+12 authors] ...,
Barbara J. Wold
Richard M. Myers
Roderic Guigó
Ali Mortazavi

First Published October 23, 2019

Alu elements suggests cell-type–specific enhancer function" > Genome-wide analysis of polymerase III–transcribed Alu elements suggests cell-type–specific enhancer function

Xiao-Ou Zhang
Thomas R. Gingeras
Zhiping Weng

First Published August 14, 2019

High-throughput characterization of genetic effects on DNA–protein binding and gene transcription

Cynthia A. Kalita
Christopher D. Brown
Andrew Freiman
Jenna Isherwood
Xiaoquan Wen
Roger Pique-Regi
Francesca Luca

First Published September 25, 2018

Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target

Myungjin Jo
Ah Young Chung
Nozomu Yachie
Minchul Seo
Hyejin Jeon
Youngpyo Nam Yeojin Seo Eunmi Kim Quan Zhong
... [+4 authors] ...,
Marc Vidal
Hae Chul Park
Frederick P. Roth
Kyoungho Suk

First Published June 8, 2017

High-throughput allele-specific expression across 250 environmental conditions

Gregory A. Moyerbrailean
Allison L. Richards
Daniel Kurtz
Cynthia A. Kalita
Gordon O. Davis
Chris T. Harvey Adnan Alazizi Donovan Watza Yoram Sorokin Nancy Hauff
... [+5 authors] ...,
Xiang Zhou
Xiaoquan Wen
Roger Pique-Regi
Francesca Luca

First Published October 19, 2016

An extended set of yeast-based functional assays accurately identifies human disease mutations

Song Sun
Fan Yang
Guihong Tan
Michael Costanzo
Rose Oughtred
Jodi Hirschman Chandra L. Theesfeld Pritpal Bansal Nidhi Sahni Song Yi Analyn Yu Tanya Tyagi Cathy Tie David E. Hill Marc Vidal
... [+10 authors] ...,
Brenda J. Andrews
Charles Boone
Kara Dolinski
Frederick P. Roth

First Published March 14, 2016

Bacterial infection remodels the DNA methylation landscape of human dendritic cells

Alain Pacis
Ludovic Tailleux
Alexander M. Morin
John Lambourne
Julia L. MacIsaac
Vania Yotova Anne Dumaine Anne Danckaert Francesca Luca Jean-Christophe Grenier Kasper D. Hansen Brigitte Gicquel Miao Yu Athma Pai Chuan He Jenny Tung Tomi Pastinen
... [+12 authors] ...,
Michael S. Kobor
Roger Pique-Regi
Yoav Gilad
Luis B. Barreiro

First Published September 21, 2015

De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements

Felix Schlesinger
Andrew D. Smith
Thomas R. Gingeras
Gregory J. Hannon
Emily Hodges

First Published June 28, 2013

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