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Method

Multicondition and multimodal temporal profile inference during mouse embryonic development

  • Ran Zhang
  • Chengxiang Qiu
  • Galina N. Filippova
  • Gang Li
  • Jay Shendure
  • Jean-Philippe Vert
  • Xinxian Deng
  • William Stafford Noble
  • Christine M. Disteche
  • First Published August 14, 2025
Research

Genetic control of the dynamic transcriptional response to immune stimuli and glucocorticoids at single-cell resolution

  • Justyna A. Resztak
  • Julong Wei
  • Samuele Zilioli
  • Edward Sendler
  • Adnan Alazizi
  • Henriette E. Mair-Meijers Peijun Wu Xiaoquan Wen
  • ... [+3 authors] ...,
  • Richard B. Slatcher
  • Xiang Zhou
  • Francesca Luca
  • Roger Pique-Regi
  • First Published July 13, 2023
Resource

Caenorhabditis elegans nematodes" > Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes

  • Timothy J. Durham
  • Riza M. Daza
  • Louis Gevirtzman
  • Darren A. Cusanovich
  • Olubusayo Bolonduro
  • William Stafford Noble
  • Jay Shendure
  • Robert H. Waterston
  • First Published April 22, 2021
Research

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021
Research

Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology" > Suppressor mutations in Mecp2-null mice implicate the DNA damage response in Rett syndrome pathology

  • Adebola Enikanolaiye
  • Julie Ruston
  • Rong Zeng
  • Christine Taylor
  • Marijke Schrock
  • Christie M. Buchovecky
  • Jay Shendure
  • Elif Acar
  • Monica J. Justice
  • First Published April 21, 2020
Method

High-throughput characterization of genetic effects on DNA–protein binding and gene transcription

  • Cynthia A. Kalita
  • Christopher D. Brown
  • Andrew Freiman
  • Jenna Isherwood
  • Xiaoquan Wen
  • Roger Pique-Regi
  • Francesca Luca
  • First Published September 25, 2018
Corrigendum

Corrigendum: A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published May 1, 2018
Research

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity

  • Fumitaka Inoue
  • Martin Kircher
  • Beth Martin
  • Gregory M. Cooper
  • Daniela M. Witten
  • Michael T. McManus
  • Nadav Ahituv
  • Jay Shendure
  • First Published November 9, 2016
Research

High-throughput allele-specific expression across 250 environmental conditions

  • Gregory A. Moyerbrailean
  • Allison L. Richards
  • Daniel Kurtz
  • Cynthia A. Kalita
  • Gordon O. Davis
  • Chris T. Harvey Adnan Alazizi Donovan Watza Yoram Sorokin Nancy Hauff
  • ... [+5 authors] ...,
  • Xiang Zhou
  • Xiaoquan Wen
  • Roger Pique-Regi
  • Francesca Luca
  • First Published October 19, 2016
Research

Bacterial infection remodels the DNA methylation landscape of human dendritic cells

  • Alain Pacis
  • Ludovic Tailleux
  • Alexander M. Morin
  • John Lambourne
  • Julia L. MacIsaac
  • Vania Yotova Anne Dumaine Anne Danckaert Francesca Luca Jean-Christophe Grenier Kasper D. Hansen Brigitte Gicquel Miao Yu Athma Pai Chuan He Jenny Tung Tomi Pastinen
  • ... [+12 authors] ...,
  • Michael S. Kobor
  • Roger Pique-Regi
  • Yoav Gilad
  • Luis B. Barreiro
  • First Published September 21, 2015
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