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Method

Accurate sequencing of DNA motifs able to form alternative (non-B) structures

  • Matthias H. Weissensteiner
  • Marzia A. Cremona
  • Wilfried M. Guiblet
  • Nicholas Stoler
  • Robert S. Harris
  • Monika Cechova
  • ... [+1 authors] ...,
  • Kristin A. Eckert
  • Francesca Chiaromonte
  • Yi-Fei Huang
  • Kateryna D. Makova
  • First Published July 11, 2023
Research

Diurnal and eating-associated microbial patterns revealed via high-frequency saliva sampling

  • Yichen Hu
  • Amnon Amir
  • Xiaochang Huang
  • Yan Li
  • Shi Huang
  • Elaine Wolfe
  • Sophie Weiss
  • Rob Knight
  • Zhenjiang Zech Xu
  • First Published June 10, 2022
Method

Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes

  • George Armstrong
  • Kalen Cantrell
  • Shi Huang
  • Daniel McDonald
  • Niina Haiminen
  • Anna Paola Carrieri Qiyun Zhu Antonio Gonzalez Imran McGrath Kristen L. Beck Daniel Hakim Aki S. Havulinna Guillaume Méric Teemu Niiranen Leo Lahti Veikko Salomaa Mohit Jain Michael Inouye Austin D. Swafford
  • ... [+14 authors] ...,
  • Ho-Cheol Kim
  • Laxmi Parida
  • Yoshiki Vázquez-Baeza
  • Rob Knight
  • First Published September 3, 2021
Research

Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome

  • Wilfried M. Guiblet
  • Michael DeGiorgio
  • Xiaoheng Cheng
  • Francesca Chiaromonte
  • Kristin A. Eckert
  • Yi-Fei Huang
  • Kateryna D. Makova
  • First Published June 29, 2021
Erratum

Erratum: Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information

  • Zhoutao Chen
  • Long Pham
  • Tsai-Chin Wu
  • Guoya Mo
  • Yu Xia
  • Peter L. Chang Devin Porter Tan Phan Huu Che Hao Tran Vikas Bansal Justin Shaffer Pedro Belda-Ferre Greg Humphrey Rob Knight
  • ... [+10 authors] ...,
  • Pavel Pevzner
  • Son Pham
  • Yong Wang
  • Ming Lei
  • First Published May 3, 2021
Research

Deep metagenomics examines the oral microbiome during dental caries, revealing novel taxa and co-occurrences with host molecules

  • Jonathon L. Baker
  • James T. Morton
  • Márcia Dinis
  • Ruth Alvarez
  • Nini C. Tran
  • Rob Knight
  • Anna Edlund
  • First Published November 25, 2020
Method

Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical long-range sequencing information

  • Zhoutao Chen
  • Long Pham
  • Tsai-Chin Wu
  • Guoya Mo
  • Yu Xia
  • Peter L. Chang Devin Porter Tan Phan Huu Che Hao Tran Vikas Bansal Justin Shaffer Pedro Belda-Ferre Greg Humphrey Rob Knight
  • ... [+10 authors] ...,
  • Pavel Pevzner
  • Son Pham
  • Yong Wang
  • Ming Lei
  • First Published June 15, 2020
Resource

Organ-level protein networks as a reference for the host effects of the microbiome

  • Robert H. Mills
  • Jacob M. Wozniak
  • Alison Vrbanac
  • Anaamika Campeau
  • Benoit Chassaing
  • Andrew Gewirtz
  • Rob Knight
  • David J. Gonzalez
  • First Published January 28, 2020
Research

Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate

  • Wilfried M. Guiblet
  • Marzia A. Cremona
  • Monika Cechova
  • Robert S. Harris
  • Iva Kejnovská
  • Eduard Kejnovsky
  • Kristin Eckert
  • Francesca Chiaromonte
  • Kateryna D. Makova
  • First Published November 6, 2018
Corrigendum

Corrigendum: A genome-wide analysis of common fragile sites: What features determine chromosomal instability in the human genome?

  • Arkarachai Fungtammasan
  • Erin Walsh
  • Francesca Chiaromonte
  • Kristin A. Eckert
  • Kateryna D. Makova
  • First Published October 3, 2016
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