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Read clouds uncover variation in complex regions of the human genome

Alex Bishara
Yuling Liu
Ziming Weng
Dorna Kashef-Haghighi
Daniel E. Newburger
Robert West
Arend Sidow
Serafim Batzoglou

First Published August 18, 2015

Parente2: a fast and accurate method for detecting identity by descent

Jesse M. Rodriguez
Sivan Bercovici
Lin Huang
Roy Frostig
Serafim Batzoglou

First Published October 1, 2014

Meis1 alters enhancer function in the developing telencephalon" > Restless Legs Syndrome-associated intronic common variant in Meis1 alters enhancer function in the developing telencephalon

Derek Spieler
Maria Kaffe
Franziska Knauf
José Bessa
Juan J. Tena
Florian Giesert Barbara Schormair Erik Tilch Heekyoung Lee Marion Horsch Darina Czamara Nazanin Karbalai Christine von Toerne Melanie Waldenberger Christian Gieger Peter Lichtner Melina Claussnitzer Ronald Naumann Bertram Müller-Myhsok Miguel Torres Lillian Garrett Jan Rozman Martin Klingenspor Valérie Gailus-Durner Helmut Fuchs Martin Hrabě de Angelis Johannes Beckers Sabine M. Hölter Thomas Meitinger Stefanie M. Hauck Helmut Laumen
... [+26 authors] ...,
Wolfgang Wurst
Fernando Casares
Jose Luis Gómez-Skarmeta
Juliane Winkelmann

First Published March 18, 2014

Genome evolution during progression to breast cancer

Daniel E. Newburger
Dorna Kashef-Haghighi
Ziming Weng
Raheleh Salari
Robert T. Sweeney
Alayne L. Brunner Shirley X. Zhu Xiangqian Guo Sushama Varma
... [+4 authors] ...,
Megan L. Troxell
Robert B. West
Serafim Batzoglou
Arend Sidow

First Published April 8, 2013

Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions

Marina Naval-Sánchez
Delphine Potier
Lotte Haagen
Máximo Sánchez
Sebastian Munck
Bram Van de Sande
Fernando Casares
Valerie Christiaens
Stein Aerts

First Published October 15, 2012

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

Anshul Kundaje
Sofia Kyriazopoulou-Panagiotopoulou
Max Libbrecht
Cheryl L. Smith
Debasish Raha
Elliott E. Winters
... [+1 authors] ...,
Steven M. Johnson
Michael Snyder
Serafim Batzoglou
Arend Sidow

First Published September 5, 2012

Linking disease associations with regulatory information in the human genome

Marc A. Schaub
Alan P. Boyle
Anshul Kundaje
Serafim Batzoglou
Michael Snyder

First Published September 5, 2012

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Stephen G. Landt
Georgi K. Marinov
Anshul Kundaje
Pouya Kheradpour
Florencia Pauli
Serafim Batzoglou Bradley E. Bernstein Peter Bickel James B. Brown Philip Cayting Yiwen Chen Gilberto DeSalvo Charles Epstein Katherine I. Fisher-Aylor Ghia Euskirchen Mark Gerstein Jason Gertz Alexander J. Hartemink Michael M. Hoffman Vishwanath R. Iyer Youngsook L. Jung Subhradip Karmakar Manolis Kellis Peter V. Kharchenko Qunhua Li Tao Liu X. Shirley Liu Lijia Ma Aleksandar Milosavljevic Richard M. Myers Peter J. Park Michael J. Pazin Marc D. Perry Debasish Raha Timothy E. Reddy Joel Rozowsky Noam Shoresh Arend Sidow Matthew Slattery John A. Stamatoyannopoulos Michael Y. Tolstorukov Kevin P. White Simon Xi
... [+38 authors] ...,
Peggy J. Farnham
Jason D. Lieb
Barbara J. Wold
Michael Snyder

First Published September 5, 2012

Evolutionary constraint facilitates interpretation of genetic variation in resequenced human genomes

David L. Goode
Gregory M. Cooper
Jeremy Schmutz
Mark Dickson
Eidelyn Gonzales
Ming Tsai Kalpana Karra
... [+2 authors] ...,
Eugene Davydov
Serafim Batzoglou
Richard M. Myers
Arend Sidow

First Published January 12, 2010

SMAD7 expression" > The colorectal cancer risk at 18q21 is caused by a novel variant altering SMAD7 expression

Alan M. Pittman
Silvia Naranjo
Emily Webb
Peter Broderick
Esther H. Lips
Tom van Wezel Hans Morreau Kate Sullivan Sarah Fielding Philip Twiss Jayaram Vijayakrishnan
... [+6 authors] ...,
Fernando Casares
Mobshra Qureshi
José Luis Gómez-Skarmeta
Richard S. Houlston

First Published April 24, 2009

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