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Adaptation of centromeres to breakage through local genomic and epigenomic remodeling in wheat

Jingwei Zhou
Yuhong Huang
Huan Ma
Yiqian Chen
Chuanye Chen
Fangpu Han
Handong Su

First Published September 30, 2025

Analyzing rare mutations in metagenomes assembled using long and accurate reads

Marcus W. Fedarko
Mikhail Kolmogorov
Pavel A. Pevzner

First Published November 23, 2022

Fast and accurate mapping of long reads to complete genome assemblies with VerityMap

Andrey V. Bzikadze
Alla Mikheenko
Pavel A. Pevzner

First Published November 15, 2022

Automated annotation of human centromeres with HORmon

Olga Kunyavskaya
Tatiana Dvorkina
Andrey V. Bzikadze
Ivan A. Alexandrov
Pavel A. Pevzner

First Published May 11, 2022

Gene prediction in the immunoglobulin loci

Vikram Sirupurapu
Yana Safonova
Pavel A. Pevzner

First Published May 11, 2022

Variations in antibody repertoires correlate with vaccine responses

Yana Safonova
Sung Bong Shin
Luke Kramer
James Reecy
Corey T. Watson
Timothy P.L. Smith
Pavel A. Pevzner

First Published March 31, 2022

Genome-wide mapping reveals R-loops associated with centromeric repeats in maize

Yang Liu
Qian Liu
Handong Su
Kunpeng Liu
Xue Xiao
Wei Li
Qianwen Sun
James A. Birchler
Fangpu Han

First Published July 9, 2021

V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s

Yana Safonova
Pavel A. Pevzner

First Published September 18, 2020

BiosyntheticSPAdes: reconstructing biosynthetic gene clusters from assembly graphs

Dmitry Meleshko
Hosein Mohimani
Vittorio Tracanna
Iman Hajirasouliha
Marnix H. Medema
Anton Korobeynikov
Pavel A. Pevzner

First Published June 3, 2019

Plasmid detection and assembly in genomic and metagenomic data sets

Dmitry Antipov
Mikhail Raiko
Alla Lapidus
Pavel A. Pevzner

First Published May 2, 2019

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