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Resource

Tetrahymena" > A systems view on DNA damage response kinetics in Tetrahymena

  • Emily Nischwitz
  • Vivien A.C. Schoonenberg
  • Rachel Mullner
  • Albert Fradera-Sola
  • Susanne Zimbelmann
  • Joshua J. Smith
  • Falk Butter
  • First Published January 28, 2026
Research

Integrating short-read and long-read single-cell RNA sequencing for comprehensive transcriptome profiling in mouse retina

  • Meng Wang
  • Yumei Li
  • Jun Wang
  • Soo Hwan Oh
  • Yexuan Cao
  • Rui Chen
  • First Published March 6, 2025
Research

Paramecium" > ISWI1 complex proteins facilitate developmental genome editing in Paramecium

  • Aditi Singh
  • Lilia Häußermann
  • Christiane Emmerich
  • Emily Nischwitz
  • Brandon K.B. Seah
  • Falk Butter
  • Mariusz Nowacki
  • Estienne C. Swart
  • First Published November 14, 2024
Method

CodonBERT large language model for mRNA vaccines

  • Sizhen Li
  • Saeed Moayedpour
  • Ruijiang Li
  • Michael Bailey
  • Saleh Riahi
  • Lorenzo Kogler-Anele Milad Miladi Jacob Miner Fabien Pertuy Dinghai Zheng Jun Wang Akshay Balsubramani Khang Tran Minnie Zacharia Monica Wu Xiaobo Gu Ryan Clinton Carla Asquith Joseph Skaleski Lianne Boeglin Sudha Chivukula Anusha Dias Tod Strugnell
  • ... [+18 authors] ...,
  • Fernando Ulloa Montoya
  • Vikram Agarwal
  • Ziv Bar-Joseph
  • Sven Jager
  • First Published July 1, 2024
Research

TERT promoter" > E4F1 and ZNF148 are transcriptional activators of the −57A > C and wild-type TERT promoter

  • Boon Haow Chua
  • Nurkaiyisah Zaal Anuar
  • Laure Ferry
  • Cecilia Domrane
  • Anna Wittek
  • Vineeth T. Mukundan Sudhakar Jha
  • ... [+2 authors] ...,
  • Falk Butter
  • Daniel G. Tenen
  • Pierre-Antoine Defossez
  • Dennis Kappei
  • First Published November 2, 2023
Method

Nematode gene annotation by machine-learning-assisted proteotranscriptomics enables proteome-wide evolutionary analysis

  • Alejandro Ceron-Noriega
  • Miguel V. Almeida
  • Michal Levin
  • Falk Butter
  • First Published January 18, 2023
Research

Rhizophagus irregularis" > Transcriptional activity and epigenetic regulation of transposable elements in the symbiotic fungus Rhizophagus irregularis

  • Alexandra Dallaire
  • Bethan F. Manley
  • Maya Wilkens
  • Iliana Bista
  • Clement Quan
  • Edouard Evangelisti Charles R. Bradshaw Navin B. Ramakrishna
  • ... [+3 authors] ...,
  • Sebastian Schornack
  • Falk Butter
  • Uta Paszkowski
  • Eric A. Miska
  • First Published November 12, 2021
Method

Predicting unrecognized enhancer-mediated genome topology by an ensemble machine learning model

  • Li Tang
  • Matthew C. Hill
  • Jun Wang
  • Jianxin Wang
  • James F. Martin
  • Min Li
  • First Published November 12, 2020
Resource

Assembly and analysis of 100 full MHC haplotypes from the Danish population

  • Jacob M. Jensen
  • Palle Villesen
  • Rune M. Friborg
  • Thomas Mailund
  • Søren Besenbacher
  • Mikkel H. Schierup Lasse Maretty Jacob Malte Jensen Bent Petersen Jonas Andreas Sibbesen Siyang Liu Palle Villesen Laurits Skov Kirstine Belling Christian Theil Have Jose M.G. Izarzugaza Marie Grosjean Jette Bork-Jensen Jakob Grove Thomas D. Als Shujia Huang Yuqi Chang Ruiqi Xu Weijian Ye Junhua Rao Xiaosen Guo Jihua Sun Hongzhi Cao Chen Ye Johan v Beusekom Thomas Espeseth Esben Flindt Rune M. Friborg Anders E. Halager Stephanie Le Hellard Christina M. Hultman Francesco Lescai Shengting Li Ole Lund Peter Løngren Thomas Mailund Maria Luisa Matey-Hernandez Ole Mors Christian N.S. Pedersen Thomas Sicheritz-Pontén Patrick Sullivan Ali Syed David Westergaard Rachita Yadav Ning Li Xun Xu Torben Hansen Anders Krogh Lars Bolund Thorkild I.A. Sørensen Oluf Pedersen Ramneek Gupta Simon Rasmussen Søren Besenbacher Anders D. Børglum Jun Wang
  • ... [+56 authors] ...,
  • Hans Eiberg
  • Karsten Kristiansen
  • Søren Brunak
  • Mikkel Heide Schierup
  • First Published August 3, 2017
Resource

Drosophila melanogaster" > The developmental proteome of Drosophila melanogaster

  • Nuria Casas-Vila
  • Alina Bluhm
  • Sergi Sayols
  • Nadja Dinges
  • Mario Dejung
  • Tina Altenhein
  • ... [+1 authors] ...,
  • Dennis Kappei
  • Benjamin Altenhein
  • Jean-Yves Roignant
  • Falk Butter
  • First Published April 5, 2017
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