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Evolution of transcription factor binding through sequence variations and turnover of binding sites

Gat Krieger
Offir Lupo
Patricia Wittkopp
Naama Barkai

First Published May 26, 2022

Rtt109 promotes nucleosome replacement ahead of the replication fork

Felix Jonas
Gilad Yaakov
Naama Barkai

First Published May 24, 2022

Rtt109 slows replication speed by histone N-terminal acetylation

Nelly Frenkel
Felix Jonas
Miri Carmi
Gilad Yaakov
Naama Barkai

First Published February 9, 2021

Independent evolution of transcript abundance and gene regulatory dynamics

Gat Krieger
Offir Lupo
Avraham A. Levy
Naama Barkai

First Published July 22, 2020

Model-based analysis of DNA replication profiles: predicting replication fork velocity and initiation rate by profiling free-cycling cells

Ariel Gispan
Miri Carmi
Naama Barkai

First Published December 27, 2016

Chromatin dynamics during DNA replication

Raz Bar-Ziv
Yoav Voichek
Naama Barkai

First Published May 25, 2016

Linking the signaling cascades and dynamic regulatory networks controlling stress responses

Anthony Gitter
Miri Carmi
Naama Barkai
Ziv Bar-Joseph

First Published October 11, 2012

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

Chao Cheng
Roger Alexander
Renqiang Min
Jing Leng
Kevin Y. Yip
Joel Rozowsky Koon-Kiu Yan Xianjun Dong Sarah Djebali Yijun Ruan Carrie A. Davis Piero Carninci Timo Lassman Thomas R. Gingeras Roderic Guigó
... [+10 authors] ...,
Ewan Birney
Zhiping Weng
Michael Snyder
Mark Gerstein

First Published September 5, 2012

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

Jie Wang
Jiali Zhuang
Sowmya Iyer
XinYing Lin
Troy W. Whitfield
Melissa C. Greven Brian G. Pierce Xianjun Dong Anshul Kundaje Yong Cheng Oliver J. Rando Ewan Birney
... [+7 authors] ...,
Richard M. Myers
William S. Noble
Michael Snyder
Zhiping Weng

First Published September 5, 2012

Noise–mean relationship in mutated promoters

Gil Hornung
Raz Bar-Ziv
Dalia Rosin
Nobuhiko Tokuriki
Dan S. Tawfik
Moshe Oren
Naama Barkai

First Published July 20, 2012

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