Crunch: integrated processing and modeling of ChIP-seq data in terms of regulatory motifs
- First Published May 28, 2019
ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs
- First Published February 10, 2014
Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting
- First Published September 10, 2012
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
- First Published September 5, 2012
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
- First Published September 5, 2012
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration
- First Published July 27, 2011
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
- First Published July 12, 2011
Genome-wide identification of conserved regulatory function in diverged sequences
- First Published May 31, 2011
Efficient storage of high throughput DNA sequencing data using reference-based compression
- First Published January 18, 2011