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Evolutionarily new genes in humans with disease phenotypes reveal functional enrichment patterns shaped by adaptive innovation and sexual selection

Jian-Hai Chen
Patrick Landback
Deanna Arsala
Alexander Guzzetta
Shengqian Xia
Jared Atlas Dylan Sosa
... [+2 authors] ...,
Yong E. Zhang
Jingqiu Cheng
Bairong Shen
Manyuan Long

First Published February 14, 2025

Drosophila melanogaster" > Corrigendum: A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster

Ge Gao
Maria D. Vibranovski
Li Zhang
Zheng Li
Min Liu
Yong E. Zhang Xinmin Li Wenxia Zhang
... [+3 authors] ...,
Qichang Fan
Nicholas W. VanKuren
Manyuan Long
Liping Wei

First Published September 3, 2019

GenTree, an integrated resource for analyzing the evolution and function of primate-specific coding genes

Yi Shao
Chunyan Chen
Hao Shen
Bin Z. He
Daqi Yu
Shuai Jiang Shilei Zhao Zhiqiang Gao Zhenglin Zhu Xi Chen Yan Fu
... [+6 authors] ...,
Hua Chen
Ge Gao
Manyuan Long
Yong E. Zhang

First Published March 12, 2019

LTR-mediated retroposition as a mechanism of RNA-based duplication in metazoans

Shengjun Tan
Margarida Cardoso-Moreira
Wenwen Shi
Dan Zhang
Jiawei Huang
Yanan Mao Hangxing Jia Yaqiong Zhang Chunyan Chen Yi Shao Liang Leng
... [+6 authors] ...,
Zhonghua Liu
Xun Huang
Manyuan Long
Yong E. Zhang

First Published October 20, 2016

Drosophila melanogaster" > A long-term demasculinization of X-linked intergenic noncoding RNAs in Drosophila melanogaster

Ge Gao
Maria D. Vibranovski
Li Zhang
Zheng Li
Ming Liu
Yong E. Zhang Xinmin Li Wenxia Zhang
... [+3 authors] ...,
Qichang Fan
Nicholas W. VanKuren
Manyuan Long
Liping Wei

First Published January 9, 2014

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

Chao Cheng
Roger Alexander
Renqiang Min
Jing Leng
Kevin Y. Yip
Joel Rozowsky Koon-Kiu Yan Xianjun Dong Sarah Djebali Yijun Ruan Carrie A. Davis Piero Carninci Timo Lassman Thomas R. Gingeras Roderic Guigó
... [+10 authors] ...,
Ewan Birney
Zhiping Weng
Michael Snyder
Mark Gerstein

First Published September 5, 2012

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

Jie Wang
Jiali Zhuang
Sowmya Iyer
XinYing Lin
Troy W. Whitfield
Melissa C. Greven Brian G. Pierce Xianjun Dong Anshul Kundaje Yong Cheng Oliver J. Rando Ewan Birney
... [+7 authors] ...,
Richard M. Myers
William S. Noble
Michael Snyder
Zhiping Weng

First Published September 5, 2012

Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells

Bum-Kyu Lee
Akshay A. Bhinge
Anna Battenhouse
Ryan M. McDaniell
Zheng Liu
Lingyun Song Yunyun Ni Ewan Birney
... [+3 authors] ...,
Jason D. Lieb
Terrence S. Furey
Gregory E. Crawford
Vishwanath R. Iyer

First Published November 16, 2011

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

Lingyun Song
Zhancheng Zhang
Linda L. Grasfeder
Alan P. Boyle
Paul G. Giresi
Bum-Kyu Lee Nathan C. Sheffield Stefan Gräf Mikael Huss Damian Keefe Zheng Liu Darin London Ryan M. McDaniell Yoichiro Shibata Kimberly A. Showers Jeremy M. Simon Teresa Vales Tianyuan Wang Deborah Winter Zhuzhu Zhang Neil D. Clarke Ewan Birney
... [+17 authors] ...,
Vishwanath R. Iyer
Gregory E. Crawford
Jason D. Lieb
Terrence S. Furey

First Published July 12, 2011

Efficient storage of high throughput DNA sequencing data using reference-based compression

Markus Hsi-Yang Fritz
Rasko Leinonen
Guy Cochrane
Ewan Birney

First Published January 18, 2011

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