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Benchmarking small-variant genotyping in polyploids

  • First Published December 29, 2021

The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes

  • First Published March 11, 2013

Understanding transcriptional regulation by integrative analysis of transcription factor binding data

  • First Published September 5, 2012

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

  • First Published September 5, 2012

Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells

  • First Published November 16, 2011

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

  • First Published July 12, 2011

Efficient storage of high throughput DNA sequencing data using reference-based compression

  • First Published January 18, 2011

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

  • First Published November 24, 2010

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

  • First Published October 27, 2010

Dindel: Accurate indel calls from short-read data

  • First Published October 27, 2010
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