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Research

Genome evolution in parthenogenetic nematodes shaped by chromosome rearrangements and introgression

  • George Chung
  • Lewis Stevens
  • Xiaoguang Dai
  • Scott Hickey
  • Karin Kiontke
  • Priyesh Rughani Manuela R. Kieninger Joanna C. Collins Sissel Juul
  • ... [+4 authors] ...,
  • Fabio Piano
  • David H.A. Fitch
  • Mark Blaxter
  • Kristin C. Gunsalus
  • First Published May 29, 2026
Method

De novo antibody identification in human blood from full-length single B cell transcriptomics and matching haplotype-resolved germline assemblies

  • John Beaulaurier
  • Lynn Ly
  • J. Andrew Duty
  • Carly Tyer
  • Christian Stevens
  • Chuan-Tien Hung Akash Sookdeo Alex W. Drong Shreyas Kowdle Axel Guzman-Solis Domenico Tortorella
  • ... [+6 authors] ...,
  • Daniel J. Turner
  • Sissel Juul
  • Scott Hickey
  • Benhur Lee
  • First Published March 21, 2025
Method

Phased nanopore assembly with Shasta and modular graph phasing with GFAse

  • Ryan Lorig-Roach
  • Melissa Meredith
  • Jean Monlong
  • Miten Jain
  • Hugh E. Olsen
  • Brandy McNulty David Porubsky Tessa G. Montague Julian K. Lucas Chris Condon Jordan M. Eizenga Sissel Juul Sean K. McKenzie Sara E. Simmonds Jimin Park Mobin Asri Sergey Koren Evan E. Eichler Richard Axel
  • ... [+14 authors] ...,
  • Bruce Martin
  • Paolo Carnevali
  • Karen H. Miga
  • Benedict Paten
  • First Published April 16, 2024
Method

Assembly-free single-molecule sequencing recovers complete virus genomes from natural microbial communities

  • John Beaulaurier
  • Elaine Luo
  • John M. Eppley
  • Paul Den Uyl
  • Xiaoguang Dai
  • Andrew Burger Daniel J. Turner
  • ... [+2 authors] ...,
  • Matthew Pendelton
  • Sissel Juul
  • Eoghan Harrington
  • Edward F. DeLong
  • First Published February 19, 2020
Letter

Complex selection on 5′ splice sites in intron-rich organisms

  • Manuel Irimia
  • Scott William Roy
  • Daniel E. Neafsey
  • Josep F. Abril
  • Jordi Garcia-Fernandez
  • Eugene V. Koonin
  • First Published September 10, 2009
LETTER

Evolution of protein domain promiscuity in eukaryotes

  • Malay Kumar Basu
  • Liran Carmel
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published January 29, 2008
LETTER

Three distinct modes of intron dynamics in the evolution of eukaryotes

  • Liran Carmel
  • Yuri I. Wolf
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published May 10, 2007
LETTER

Evolutionarily conserved genes preferentially accumulate introns

  • Liran Carmel
  • Igor B. Rogozin
  • Yuri I. Wolf
  • Eugene V. Koonin
  • First Published May 10, 2007
LETTER

Origins and impact of constraints in evolution of gene families

  • Boris E. Shakhnovich
  • Eugene V. Koonin
  • First Published October 19, 2006
LETTER

Coelomata and Not Ecdysozoa: Evidence From Genome-Wide Phylogenetic Analysis

  • Yuri I. Wolf
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published January 5, 2004
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