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KRAB zinc-finger proteins regulate endogenous retroviruses to sculpt germline transcriptomes and genome evolution

  • Kai Otsuka
  • Akihiko Sakashita
  • So Maezawa
  • Richard M. Schultz
  • Satoshi H. Namekawa
  • First Published March 12, 2025

Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes

  • Vedran Franke
  • Sravya Ganesh
  • Rosa Karlic
  • Radek Malik
  • Josef Pasulka
  • Filip Horvat Maja Kuzman Helena Fulka Marketa Cernohorska Jana Urbanova Eliska Svobodova Jun Ma Yutaka Suzuki
  • ... [+8 authors] ...,
  • Fugaku Aoki
  • Richard M. Schultz
  • Kristian Vlahovicek
  • Petr Svoboda
  • First Published May 18, 2017

Complex selection on 5′ splice sites in intron-rich organisms

  • Manuel Irimia
  • Scott William Roy
  • Daniel E. Neafsey
  • Josep F. Abril
  • Jordi Garcia-Fernandez
  • Eugene V. Koonin
  • First Published September 10, 2009

Evolution of protein domain promiscuity in eukaryotes

  • Malay Kumar Basu
  • Liran Carmel
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published January 29, 2008

Three distinct modes of intron dynamics in the evolution of eukaryotes

  • Liran Carmel
  • Yuri I. Wolf
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published May 10, 2007

Evolutionarily conserved genes preferentially accumulate introns

  • Liran Carmel
  • Igor B. Rogozin
  • Yuri I. Wolf
  • Eugene V. Koonin
  • First Published May 10, 2007

Origins and impact of constraints in evolution of gene families

  • Boris E. Shakhnovich
  • Eugene V. Koonin
  • First Published October 19, 2006

Coelomata and Not Ecdysozoa: Evidence From Genome-Wide Phylogenetic Analysis

  • Yuri I. Wolf
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published January 5, 2004

Gene Loss, Protein Sequence Divergence, Gene Dispensability, Expression Level, and Interactivity Are Correlated in Eukaryotic Evolution

  • Dmitri M. Krylov
  • Yuri I. Wolf
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published October 2, 2003

The Role of Lineage-Specific Gene Family Expansion in the Evolution of Eukaryotes

  • Olivier Lespinet
  • Yuri I. Wolf
  • Eugene V. Koonin
  • L. Aravind
  • First Published July 1, 2002
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