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Method

Spatial Cellular Networks from omics data with SpaCeNet

  • Stefan Schrod
  • Niklas Lück
  • Robert Lohmayer
  • Stefan Solbrig
  • Dennis Völkl
  • Tina Wipfler Katherine H. Shutta Marouen Ben Guebila Andreas Schäfer Tim Beißbarth
  • ... [+5 authors] ...,
  • Helena U. Zacharias
  • Peter J. Oefner
  • John Quackenbush
  • Michael Altenbuchinger
  • First Published September 4, 2024
Method

Bayesian inference of sample-specific coexpression networks

  • Enakshi Saha
  • Viola Fanfani
  • Panagiotis Mandros
  • Marouen Ben Guebila
  • Jonas Fischer
  • Katherine H. Shutta
  • Dawn L. DeMeo
  • Camila M. Lopes-Ramos
  • John Quackenbush
  • First Published August 12, 2024
Method

Predicting genotype-specific gene regulatory networks

  • Deborah Weighill
  • Marouen Ben Guebila
  • Kimberly Glass
  • John Quackenbush
  • John Platig
  • First Published February 22, 2022
Letter

Complex selection on 5′ splice sites in intron-rich organisms

  • Manuel Irimia
  • Scott William Roy
  • Daniel E. Neafsey
  • Josep F. Abril
  • Jordi Garcia-Fernandez
  • Eugene V. Koonin
  • First Published September 10, 2009
LETTER

Evolution of protein domain promiscuity in eukaryotes

  • Malay Kumar Basu
  • Liran Carmel
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published January 29, 2008
LETTER

Three distinct modes of intron dynamics in the evolution of eukaryotes

  • Liran Carmel
  • Yuri I. Wolf
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published May 10, 2007
LETTER

Evolutionarily conserved genes preferentially accumulate introns

  • Liran Carmel
  • Igor B. Rogozin
  • Yuri I. Wolf
  • Eugene V. Koonin
  • First Published May 10, 2007
LETTER

Origins and impact of constraints in evolution of gene families

  • Boris E. Shakhnovich
  • Eugene V. Koonin
  • First Published October 19, 2006
LETTER

Uneven chromosome contraction and expansion in the maize genome

  • Rémy Bruggmann
  • Arvind K. Bharti
  • Heidrun Gundlach
  • Jinsheng Lai
  • Sarah Young
  • Ana C. Pontaroli Fusheng Wei Georg Haberer Galina Fuks Chunguang Du Christina Raymond Matt C. Estep Renyi Liu Jeffrey L. Bennetzen Agnes P. Chan Pablo D. Rabinowicz John Quackenbush W. Brad Barbazuk Rod A. Wing Bruce Birren
  • ... [+15 authors] ...,
  • Chad Nusbaum
  • Steve Rounsley
  • Klaus F.X. Mayer
  • Joachim Messing
  • First Published August 10, 2006
LETTER

Coelomata and Not Ecdysozoa: Evidence From Genome-Wide Phylogenetic Analysis

  • Yuri I. Wolf
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published January 5, 2004
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