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Research

Confounding factors in assessing the enriched expression of somatic mutant alleles in bulk tumor samples

  • Kohei Hagiwara
  • Andrew Thrasher
  • Nadezhda V. Terekhanova
  • Jinghui Zhang
  • First Published March 4, 2026
Resource

Pediatric Cancer Variant Pathogenicity Information Exchange (PeCanPIE): a cloud-based platform for curating and classifying germline variants

  • Michael N. Edmonson
  • Aman N. Patel
  • Dale J. Hedges
  • Zhaoming Wang
  • Evadnie Rampersaud
  • Chimene A. Kesserwan Xin Zhou Yanling Liu Scott Newman Michael C. Rusch Clay L. McLeod Mark R. Wilkinson Stephen V. Rice Thierry Soussi J. Paul Taylor Michael Benatar Jared B. Becksfort
  • ... [+12 authors] ...,
  • Kim E. Nichols
  • Leslie L. Robison
  • James R. Downing
  • Jinghui Zhang
  • First Published August 22, 2019
Research

An integrated systems genetics screen reveals the transcriptional structure of inherited predisposition to metastatic disease

  • Farhoud Faraji
  • Ying Hu
  • Gang Wu
  • Natalie E. Goldberger
  • Renard C. Walker
  • Jinghui Zhang
  • Kent W. Hunter
  • First Published December 9, 2013
Research

PRDM9 associated with childhood leukemogenesis" > Rare allelic forms of PRDM9 associated with childhood leukemogenesis

  • Julie Hussin
  • Daniel Sinnett
  • Ferran Casals
  • Youssef Idaghdour
  • Vanessa Bruat
  • Virginie Saillour Jasmine Healy Jean-Christophe Grenier Thibault de Malliard Stephan Busche Jean-François Spinella Mathieu Larivière Greg Gibson Anna Andersson Linda Holmfeldt Jing Ma Lei Wei Jinghui Zhang
  • ... [+13 authors] ...,
  • Gregor Andelfinger
  • James R. Downing
  • Charles G. Mullighan
  • Philip Awadalla
  • First Published December 5, 2012
Letter

Complex selection on 5′ splice sites in intron-rich organisms

  • Manuel Irimia
  • Scott William Roy
  • Daniel E. Neafsey
  • Josep F. Abril
  • Jordi Garcia-Fernandez
  • Eugene V. Koonin
  • First Published September 10, 2009
LETTER

Evolution of protein domain promiscuity in eukaryotes

  • Malay Kumar Basu
  • Liran Carmel
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published January 29, 2008
RESOURCE

Systematic analysis of genetic alterations in tumors using Cancer Genome WorkBench (CGWB)

  • Jinghui Zhang
  • Richard P. Finney
  • William Rowe
  • Michael Edmonson
  • Sei Hoon Yang
  • Tatiana Dracheva
  • Jin Jen
  • Jeffery P. Struewing
  • Kenneth H. Buetow
  • First Published May 24, 2007
LETTER

Three distinct modes of intron dynamics in the evolution of eukaryotes

  • Liran Carmel
  • Yuri I. Wolf
  • Igor B. Rogozin
  • Eugene V. Koonin
  • First Published May 10, 2007
LETTER

Evolutionarily conserved genes preferentially accumulate introns

  • Liran Carmel
  • Igor B. Rogozin
  • Yuri I. Wolf
  • Eugene V. Koonin
  • First Published May 10, 2007
LETTER

Origins and impact of constraints in evolution of gene families

  • Boris E. Shakhnovich
  • Eugene V. Koonin
  • First Published October 19, 2006
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