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Crunch: integrated processing and modeling of ChIP-seq data in terms of regulatory motifs

  • First Published May 28, 2019

Read clouds uncover variation in complex regions of the human genome

  • First Published August 18, 2015

Drosophila wing development" > A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development

  • First Published January 7, 2015

Parente2: a fast and accurate method for detecting identity by descent

  • First Published October 1, 2014

ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs

  • First Published February 10, 2014

Genome evolution during progression to breast cancer

  • First Published April 8, 2013

Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting

  • First Published September 10, 2012

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

  • First Published September 5, 2012

Linking disease associations with regulatory information in the human genome

  • First Published September 5, 2012

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

  • First Published September 5, 2012
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