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Method

Crunch: integrated processing and modeling of ChIP-seq data in terms of regulatory motifs

Severin Berger
Mikhail Pachkov
Phil Arnold
Saeed Omidi
Nicholas Kelley
Silvia Salatino
Erik van Nimwegen

First Published May 28, 2019

Research

Drosophila wing development" > A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development

Claus Schertel
Monica Albarca
Claudia Rockel-Bauer
Nicholas W. Kelley
Johannes Bischof
Korneel Hens
Erik van Nimwegen
Konrad Basler
Bart Deplancke

First Published January 7, 2015

Method

ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs

Piotr J. Balwierz
Mikhail Pachkov
Phil Arnold
Andreas J. Gruber
Mihaela Zavolan
Erik van Nimwegen

First Published February 10, 2014

Research

Modeling of epigenome dynamics identifies transcription factors that mediate Polycomb targeting

Phil Arnold
Anne Schöler
Mikhail Pachkov
Piotr J. Balwierz
Helle Jørgensen
Michael B. Stadler
Erik van Nimwegen
Dirk Schübeler

First Published September 10, 2012

Letter

The functional importance of telomere clustering: Global changes in gene expression result from SIR factor dispersion

Angela Taddei
Griet Van Houwe
Shigeki Nagai
Ionas Erb
Erik van Nimwegen
Susan M. Gasser

First Published January 29, 2009

LETTER

Universal patterns of purifying selection at noncoding positions in bacteria

Nacho Molina
Erik van Nimwegen

First Published November 21, 2007

LETTER

Decay Rates of Human mRNAs: Correlation With Functional Characteristics and Sequence Attributes

Edward Yang
Erik van Nimwegen
Mihaela Zavolan
Nikolaus Rajewsky
Mark Schroeder
Marcelo Magnasco
James E. Darnell

First Published August 5, 2003

LETTER

Splice Variation in Mouse Full-Length cDNAs Identified by Mapping to the Mouse Genome

Mihaela Zavolan
Erik van Nimwegen
Terry Gaasterland

First Published September 1, 2002